Analysis of interatomic Contacts of Structural Units in PDB entry:
1OFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OFD entry

There are 2 chains in PDB entry 1OFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1ASN 1507
B
 CYS 1ASN 1507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are145 helices in PDB entry 1OFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
29 32Right-handed 310
Helix 3
3
A
51 62Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
82 100Right-handed alpha
Helix 6
6
A
113 117Right-handed 310
Helix 7
7
A
118 125Right-handed alpha
Helix 8
8
A
140 156Right-handed alpha
Helix 9
9
A
157 159Right-handed 310
Helix 10
10
A
180 182Right-handed 310
Helix 11
11
A
183 188Right-handed alpha
Helix 12
12
A
188 193Right-handed alpha
Helix 13
13
A
214 218Right-handed 310
Helix 14
14
A
232 244Right-handed alpha
Helix 15
15
A
245 247Right-handed 310
Helix 16
16
A
253 261Right-handed alpha
Helix 17
17
A
269 284Right-handed alpha
Helix 18
18
A
287 296Right-handed alpha
Helix 19
19
A
303 307Right-handed 310
Helix 20
20
A
309 320Right-handed alpha
Helix 21
21
A
374 376Right-handed 310
Helix 22
22
A
401 411Right-handed alpha
Helix 23
23
A
414 422Right-handed alpha
Helix 24
24
A
439 450Right-handed alpha
Helix 25
25
A
453 460Right-handed alpha
Helix 26
26
A
460 468Right-handed alpha
Helix 27
27
A
490 493Right-handed 310
Helix 28
28
A
512 516Right-handed 310
Helix 29
29
A
532 537Right-handed 310
Helix 30
30
A
547 557Right-handed alpha
Helix 31
31
A
575 593Right-handed alpha
Helix 32
32
A
603 607Right-handed 310
Helix 33
33
A
617 632Right-handed alpha
Helix 34
34
A
634 638Right-handed 310
Helix 35
35
A
649 659Right-handed alpha
Helix 36
36
A
666 678Right-handed alpha
Helix 37
37
A
679 687Right-handed alpha
Helix 38
38
A
695 718Right-handed alpha
Helix 39
39
A
722 728Right-handed alpha
Helix 40
40
A
738 746Right-handed alpha
Helix 41
41
A
757 773Right-handed alpha
Helix 42
42
A
798 812Right-handed alpha
Helix 43
43
A
825 836Right-handed alpha
Helix 44
44
A
841 844Right-handed 310
Helix 45
45
A
856 860Right-handed 310
Helix 46
46
A
862 868Right-handed alpha
Helix 47
47
A
881 896Right-handed alpha
Helix 48
48
A
907 912Right-handed 310
Helix 49
49
A
953 960Right-handed alpha
Helix 50
50
A
980 984Right-handed 310
Helix 51
51
A
985 993Right-handed alpha
Helix 52
52
A
1011 1026Right-handed alpha
Helix 53
53
A
1040 1051Right-handed alpha
Helix 54
54
A
1070 1076Right-handed alpha
Helix 55
55
A
1079 1094Right-handed alpha
Helix 56
56
A
1096 1100Right-handed 310
Helix 57
57
A
1110 1120Right-handed alpha
Helix 58
58
A
1128 1135Right-handed alpha
Helix 59
59
A
1142 1146Right-handed 310
Helix 60
60
A
1156 1161Right-handed alpha
Helix 61
61
A
1166 1189Right-handed alpha
Helix 62
62
A
1192 1197Right-handed alpha
Helix 63
63
A
1199 1201Right-handed 310
Helix 64
64
A
1219 1224Right-handed alpha
Helix 65
65
A
1232 1236Right-handed 310
Helix 66
66
A
1246 1254Right-handed alpha
Helix 67
67
A
1254 1264Right-handed alpha
Helix 68
68
A
1281 1293Right-handed alpha
Helix 69
69
A
1353 1357Right-handed 310
Helix 70
70
A
1437 1442Right-handed alpha
Helix 71
71
A
1454 1473Right-handed alpha
Helix 72
72
A
1474 1483Right-handed alpha
Helix 73
73
A
1483 1489Right-handed alpha
Helix 74
74
B
15 27Right-handed alpha
Helix 75
75
B
28 32Right-handed 310
Helix 76
76
B
51 62Right-handed alpha
Helix 77
77
B
68 72Right-handed 310
Helix 78
78
B
82 100Right-handed alpha
Helix 79
79
B
113 117Right-handed 310
Helix 80
80
B
118 125Right-handed alpha
Helix 81
81
B
140 156Right-handed alpha
Helix 82
82
B
157 159Right-handed 310
Helix 83
83
B
180 182Right-handed 310
Helix 84
84
B
183 188Right-handed alpha
Helix 85
85
B
188 193Right-handed alpha
Helix 86
86
B
214 218Right-handed 310
Helix 87
87
B
232 244Right-handed alpha
Helix 88
88
B
253 261Right-handed alpha
Helix 89
89
B
269 284Right-handed alpha
Helix 90
90
B
287 296Right-handed alpha
Helix 91
91
B
303 307Right-handed 310
Helix 92
92
B
309 320Right-handed alpha
Helix 93
93
B
374 376Right-handed 310
Helix 94
94
B
402 411Right-handed alpha
Helix 95
95
B
414 422Right-handed alpha
Helix 96
96
B
439 450Right-handed alpha
Helix 97
97
B
453 460Right-handed alpha
Helix 98
98
B
460 468Right-handed alpha
Helix 99
99
B
490 493Right-handed 310
Helix 100
100
B
512 516Right-handed 310
Helix 101
101
B
532 537Right-handed 310
Helix 102
102
B
547 557Right-handed alpha
Helix 103
103
B
575 593Right-handed alpha
Helix 104
104
B
603 607Right-handed 310
Helix 105
105
B
617 632Right-handed alpha
Helix 106
106
B
634 638Right-handed 310
Helix 107
107
B
649 659Right-handed alpha
Helix 108
108
B
666 679Right-handed alpha
Helix 109
109
B
679 687Right-handed alpha
Helix 110
110
B
695 718Right-handed alpha
Helix 111
111
B
722 728Right-handed alpha
Helix 112
112
B
738 746Right-handed alpha
Helix 113
113
B
757 773Right-handed alpha
Helix 114
114
B
798 812Right-handed alpha
Helix 115
115
B
825 836Right-handed alpha
Helix 116
116
B
841 844Right-handed 310
Helix 117
117
B
856 860Right-handed 310
Helix 118
118
B
862 868Right-handed alpha
Helix 119
119
B
881 896Right-handed alpha
Helix 120
120
B
907 912Right-handed 310
Helix 121
121
B
953 960Right-handed alpha
Helix 122
122
B
980 984Right-handed 310
Helix 123
123
B
985 993Right-handed alpha
Helix 124
124
B
1011 1026Right-handed alpha
Helix 125
125
B
1040 1051Right-handed alpha
Helix 126
126
B
1070 1076Right-handed alpha
Helix 127
127
B
1079 1094Right-handed alpha
Helix 128
128
B
1096 1100Right-handed 310
Helix 129
129
B
1110 1120Right-handed alpha
Helix 130
130
B
1128 1135Right-handed alpha
Helix 131
131
B
1142 1146Right-handed 310
Helix 132
132
B
1156 1161Right-handed alpha
Helix 133
133
B
1166 1189Right-handed alpha
Helix 134
134
B
1192 1197Right-handed alpha
Helix 135
135
B
1199 1201Right-handed 310
Helix 136
136
B
1219 1224Right-handed alpha
Helix 137
137
B
1232 1236Right-handed 310
Helix 138
138
B
1246 1254Right-handed alpha
Helix 139
139
B
1254 1264Right-handed alpha
Helix 140
140
B
1281 1293Right-handed alpha
Helix 141
141
B
1353 1357Right-handed 310
Helix 142
142
B
1437 1442Right-handed alpha
Helix 143
143
B
1454 1473Right-handed alpha
Helix 144
144
B
1474 1483Right-handed alpha
Helix 145
145
B
1483 1489Right-handed alpha
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There are 24 sheets in PDB entry 1OFD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
2 7anti-parallel
Strand 5
A
362 365anti-parallel
Strand 6
A
353 357anti-parallel
Strand 7
A
378 383anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 109first strand
Strand 2
A
127 134anti-parallel
Strand 3
A
73 79anti-parallel
Strand 4
A
164 169anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
330 335anti-parallel
Strand 3
A
339 344anti-parallel
Strand 4
A
389 393anti-parallel
Strand 5
A
398 400anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 426first strand
Strand 2
A
538 541parallel
Strand 3
A
520 522anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
1068 1069anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 497first strand
Strand 2
A
732 734anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 565first strand
Strand 2
A
597 601parallel
Strand 3
A
639 643parallel
Strand 4
A
663 665parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
613 615anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 848first strand
Strand 2
A
1203 1205anti-parallel
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There are 8 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 871first strand
Strand 2
A
1124 1126parallel
Strand 3
A
1101 1105parallel
Strand 4
A
1055 1059parallel
Strand 5
A
1030 1036parallel
Strand 6
A
962 966parallel
Strand 7
A
942 945parallel
Strand 8
A
900 901parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 979first strand
Strand 2
A
1000 1001anti-parallel
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There are 10 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1266 1273first strand
Strand 2
A
1300 1309parallel
Strand 3
A
1321 1329parallel
Strand 4
A
1341 1345parallel
Strand 5
A
1372 1375parallel
Strand 6
A
1391 1394parallel
Strand 7
A
1406 1412parallel
Strand 8
A
1426 1432parallel
Strand 9
A
1491 1495anti-parallel
Strand 10
A
1448 1450anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 177first strand
Strand 2
B
44 49anti-parallel
Strand 3
B
200 205anti-parallel
Strand 4
B
2 7anti-parallel
Strand 5
B
362 365anti-parallel
Strand 6
B
353 357anti-parallel
Strand 7
B
378 383anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 109first strand
Strand 2
B
127 134anti-parallel
Strand 3
B
73 79anti-parallel
Strand 4
B
164 169anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 228first strand
Strand 2
B
330 335anti-parallel
Strand 3
B
339 344anti-parallel
Strand 4
B
389 393anti-parallel
Strand 5
B
398 401anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 426first strand
Strand 2
B
538 541parallel
Strand 3
B
520 522anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 473first strand
Strand 2
B
1068 1069anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 497first strand
Strand 2
B
732 734anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
561 565first strand
Strand 2
B
597 601parallel
Strand 3
B
639 643parallel
Strand 4
B
663 665parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
567 569first strand
Strand 2
B
613 615anti-parallel
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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
846 848first strand
Strand 2
B
1203 1205anti-parallel
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There are 8 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
870 871first strand
Strand 2
B
1124 1126parallel
Strand 3
B
1101 1105parallel
Strand 4
B
1055 1059parallel
Strand 5
B
1030 1036parallel
Strand 6
B
962 966parallel
Strand 7
B
942 945parallel
Strand 8
B
900 901parallel
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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
978 979first strand
Strand 2
B
1000 1001anti-parallel
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There are 10 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1266 1273first strand
Strand 2
B
1300 1309parallel
Strand 3
B
1321 1329parallel
Strand 4
B
1341 1345parallel
Strand 5
B
1372 1375parallel
Strand 6
B
1391 1394parallel
Strand 7
B
1406 1412parallel
Strand 8
B
1426 1432parallel
Strand 9
B
1491 1495anti-parallel
Strand 10
B
1448 1450anti-parallel
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