Analysis of interatomic Contacts of Structural Units in PDB entry:
1OFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OFM entry

There is 1 chain in PDB entry 1OFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 27HIS 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1OFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 41Right-handed alpha
Helix 2
AA2
A
360 372Right-handed alpha
Helix 3
AA3
A
430 434Right-handed 310
Helix 4
AA4
A
451 459Right-handed alpha
Helix 5
AA5
A
466 471Right-handed alpha
Helix 6
AA6
A
489 503Right-handed alpha
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There are 3 sheets in PDB entry 1OFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
46 49parallel
Strand 3
A
71 75parallel
Strand 4
A
96 99parallel
Strand 5
A
129 131parallel
Strand 6
A
161 163parallel
Strand 7
A
199 201parallel
Strand 8
A
231 233parallel
Strand 9
A
255 257parallel
Strand 10
A
277 279parallel
Strand 11
A
303 305parallel
Strand 12
A
341 343parallel
Strand 13
A
382 384parallel
Strand 14
A
410 412parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
81 85parallel
Strand 3
A
102 106parallel
Strand 4
A
134 136parallel
Strand 5
A
166 168parallel
Strand 6
A
204 207parallel
Strand 7
A
236 240parallel
Strand 8
A
260 262parallel
Strand 9
A
282 285parallel
Strand 10
A
308 311parallel
Strand 11
A
346 348parallel
Strand 12
A
387 389parallel
Strand 13
A
415 417parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
88 91parallel
Strand 3
A
121 123parallel
Strand 4
A
146 148parallel
Strand 5
A
177 179parallel
Strand 6
A
218 220parallel
Strand 7
A
245 250parallel
Strand 8
A
267 272parallel
Strand 9
A
295 297parallel
Strand 10
A
321 325parallel
Strand 11
A
353 356parallel
Strand 12
A
399 400parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il