Analysis of interatomic Contacts of Structural Units in PDB entry:
1OFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OFP entry

There are 4 chains in PDB entry 1OFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21LYS 369
B
 GLU 21LYS 370
C
 GLU 21LYS 370
D
 GLU 20LYS 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1OFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 41Right-handed alpha
Helix 2
2
A
44 63Right-handed alpha
Helix 3
3
A
80 99Right-handed alpha
Helix 4
4
A
133 151Right-handed alpha
Helix 5
5
A
164 169Right-handed alpha
Helix 6
6
A
184 194Right-handed alpha
Helix 7
7
A
208 220Right-handed alpha
Helix 8
8
A
258 268Right-handed alpha
Helix 9
9
A
291 305Right-handed alpha
Helix 10
10
A
346 368Right-handed alpha
Helix 11
11
B
33 41Right-handed alpha
Helix 12
12
B
44 63Right-handed alpha
Helix 13
13
B
80 99Right-handed alpha
Helix 14
14
B
133 151Right-handed alpha
Helix 15
15
B
163 168Right-handed 310
Helix 16
16
B
168 170Right-handed 310
Helix 17
17
B
184 193Right-handed alpha
Helix 18
18
B
208 220Right-handed alpha
Helix 19
19
B
258 267Right-handed alpha
Helix 20
20
B
291 305Right-handed alpha
Helix 21
21
B
346 369Right-handed alpha
Helix 22
22
C
33 41Right-handed alpha
Helix 23
23
C
44 63Right-handed alpha
Helix 24
24
C
80 98Right-handed alpha
Helix 25
25
C
133 151Right-handed alpha
Helix 26
26
C
164 169Right-handed alpha
Helix 27
27
C
170 172Right-handed 310
Helix 28
28
C
184 192Right-handed alpha
Helix 29
29
C
208 219Right-handed alpha
Helix 30
30
C
258 268Right-handed alpha
Helix 31
31
C
291 305Right-handed alpha
Helix 32
32
C
346 368Right-handed alpha
Helix 33
33
D
33 41Right-handed alpha
Helix 34
34
D
44 63Right-handed alpha
Helix 35
35
D
80 99Right-handed alpha
Helix 36
36
D
133 151Right-handed alpha
Helix 37
37
D
164 169Right-handed alpha
Helix 38
38
D
178 182Right-handed 310
Helix 39
39
D
184 192Right-handed alpha
Helix 40
40
D
208 219Right-handed alpha
Helix 41
41
D
258 268Right-handed alpha
Helix 42
42
D
291 305Right-handed alpha
Helix 43
43
D
346 368Right-handed alpha
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There are 8 sheets in PDB entry 1OFP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, CB, CC, DA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
B
233 238anti-parallel
Strand 3
B
223 227anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
102 107parallel
Strand 3
A
155 158parallel
Strand 4
A
172 177parallel
Strand 5
A
198 201parallel
Strand 6
A
244 248parallel
Strand 7
A
276 279parallel
Strand 8
A
310 316parallel
Strand 9
A
69 74parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
233 238anti-parallel
Strand 3
B
25 29anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
102 107parallel
Strand 3
B
155 158parallel
Strand 4
B
172 177parallel
Strand 5
B
198 201parallel
Strand 6
B
244 248parallel
Strand 7
B
276 279parallel
Strand 8
B
310 316parallel
Strand 9
B
69 74parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
D
233 238anti-parallel
Strand 3
D
223 227anti-parallel
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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 74first strand
Strand 2
C
102 107parallel
Strand 3
C
155 158parallel
Strand 4
C
174 177parallel
Strand 5
C
198 201parallel
Strand 6
C
244 248parallel
Strand 7
C
276 279parallel
Strand 8
C
310 316parallel
Strand 9
C
69 74parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 227first strand
Strand 2
C
233 238anti-parallel
Strand 3
D
25 29anti-parallel
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There are 18 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 74first strand
Strand 2
D
102 107parallel
Strand 3
D
155 158parallel
Strand 4
D
172 177parallel
Strand 5
D
102 107first strand
Strand 6
D
69 74parallel
Strand 7
D
155 158first strand
Strand 8
D
102 107parallel
Strand 9
D
172 177first strand
Strand 10
D
155 158parallel
Strand 11
D
198 201first strand
Strand 12
D
172 177parallel
Strand 13
D
244 248first strand
Strand 14
D
198 201parallel
Strand 15
D
276 279first strand
Strand 16
D
244 248parallel
Strand 17
D
310 316first strand
Strand 18
D
69 74parallel
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