Analysis of interatomic Contacts of Structural Units in PDB entry:
1OFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OFQ entry

There are 4 chains in PDB entry 1OFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1023LYS 1369
B
 VAL 2023LYS 2370
C
 VAL 3023LYS 3369
D
 VAL 4023LYS 4369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1OFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1033 1041Right-handed alpha
Helix 2
2
A
1044 1063Right-handed alpha
Helix 3
3
A
1080 1099Right-handed alpha
Helix 4
4
A
1120 1125Right-handed alpha
Helix 5
5
A
1133 1150Right-handed alpha
Helix 6
6
A
1164 1169Right-handed alpha
Helix 7
7
A
1170 1172Right-handed 310
Helix 8
8
A
1179 1182Right-handed 310
Helix 9
9
A
1184 1194Right-handed alpha
Helix 10
10
A
1208 1220Right-handed alpha
Helix 11
11
A
1258 1268Right-handed alpha
Helix 12
12
A
1281 1286Right-handed 310
Helix 13
13
A
1288 1290Right-handed 310
Helix 14
14
A
1291 1305Right-handed alpha
Helix 15
15
A
1330 1334Right-handed 310
Helix 16
16
A
1346 1368Right-handed alpha
Helix 17
17
B
2033 2041Right-handed alpha
Helix 18
18
B
2044 2063Right-handed alpha
Helix 19
19
B
2080 2099Right-handed alpha
Helix 20
20
B
2133 2150Right-handed alpha
Helix 21
21
B
2164 2169Right-handed alpha
Helix 22
22
B
2170 2172Right-handed 310
Helix 23
23
B
2184 2192Right-handed alpha
Helix 24
24
B
2208 2219Right-handed alpha
Helix 25
25
B
2258 2269Right-handed alpha
Helix 26
26
B
2288 2290Right-handed 310
Helix 27
27
B
2291 2305Right-handed alpha
Helix 28
28
B
2330 2334Right-handed 310
Helix 29
29
B
2346 2370Right-handed alpha
Helix 30
30
C
3033 3041Right-handed alpha
Helix 31
31
C
3044 3063Right-handed alpha
Helix 32
32
C
3080 3099Right-handed alpha
Helix 33
33
C
3120 3125Right-handed alpha
Helix 34
34
C
3133 3150Right-handed alpha
Helix 35
35
C
3164 3169Right-handed alpha
Helix 36
36
C
3170 3172Right-handed 310
Helix 37
37
C
3179 3182Right-handed 310
Helix 38
38
C
3184 3194Right-handed alpha
Helix 39
39
C
3208 3220Right-handed alpha
Helix 40
40
C
3258 3268Right-handed alpha
Helix 41
41
C
3281 3286Right-handed 310
Helix 42
42
C
3288 3290Right-handed 310
Helix 43
43
C
3291 3305Right-handed alpha
Helix 44
44
C
3330 3334Right-handed 310
Helix 45
45
C
3346 3368Right-handed alpha
Helix 46
46
D
4033 4041Right-handed alpha
Helix 47
47
D
4044 4063Right-handed alpha
Helix 48
48
D
4080 4099Right-handed alpha
Helix 49
49
D
4133 4150Right-handed alpha
Helix 50
50
D
4164 4169Right-handed alpha
Helix 51
51
D
4170 4172Right-handed 310
Helix 52
52
D
4184 4192Right-handed alpha
Helix 53
53
D
4208 4219Right-handed alpha
Helix 54
54
D
4258 4269Right-handed alpha
Helix 55
55
D
4288 4290Right-handed 310
Helix 56
56
D
4291 4305Right-handed alpha
Helix 57
57
D
4330 4334Right-handed 310
Helix 58
58
D
4346 4369Right-handed alpha
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There are 8 sheets in PDB entry 1OFQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, CB, CC, DA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1025 1029first strand
Strand 2
B
2233 2238anti-parallel
Strand 3
B
2223 2227anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1074first strand
Strand 2
A
1102 1107parallel
Strand 3
A
1155 1159parallel
Strand 4
A
1174 1177parallel
Strand 5
A
1198 1201parallel
Strand 6
A
1244 1248parallel
Strand 7
A
1276 1279parallel
Strand 8
A
1310 1316parallel
Strand 9
A
1069 1074parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1223 1227first strand
Strand 2
A
1233 1238anti-parallel
Strand 3
B
2025 2029anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2069 2074first strand
Strand 2
B
2102 2107parallel
Strand 3
B
2155 2158parallel
Strand 4
B
2174 2177parallel
Strand 5
B
2198 2201parallel
Strand 6
B
2244 2250parallel
Strand 7
B
2276 2283parallel
Strand 8
B
2310 2316parallel
Strand 9
B
2069 2074parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3025 3029first strand
Strand 2
D
4233 4238anti-parallel
Strand 3
D
4223 4227anti-parallel
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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3069 3074first strand
Strand 2
C
3102 3107parallel
Strand 3
C
3155 3159parallel
Strand 4
C
3174 3177parallel
Strand 5
C
3198 3201parallel
Strand 6
C
3244 3248parallel
Strand 7
C
3276 3279parallel
Strand 8
C
3310 3316parallel
Strand 9
C
3069 3074parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3223 3227first strand
Strand 2
C
3233 3238anti-parallel
Strand 3
D
4025 4030anti-parallel
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There are 18 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4069 4074first strand
Strand 2
D
4102 4107parallel
Strand 3
D
4155 4158parallel
Strand 4
D
4174 4177parallel
Strand 5
D
4102 4107first strand
Strand 6
D
4069 4074parallel
Strand 7
D
4155 4158first strand
Strand 8
D
4102 4107parallel
Strand 9
D
4174 4177first strand
Strand 10
D
4155 4158parallel
Strand 11
D
4198 4201first strand
Strand 12
D
4174 4177parallel
Strand 13
D
4244 4250first strand
Strand 14
D
4198 4201parallel
Strand 15
D
4276 4283first strand
Strand 16
D
4244 4250parallel
Strand 17
D
4310 4316first strand
Strand 18
D
4069 4074parallel
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