Analysis of interatomic Contacts of Structural Units in PDB entry:
1OFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OFU entry

There are 4 chains in PDB entry 1OFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11GLY 317
B
 THR 11GLY 317
X
 PRO 43GLY 161
Y
 PRO 43GLY 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1OFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
62 67Right-handed alpha
Helix 4
4
A
74 85Right-handed alpha
Helix 5
5
A
85 94Right-handed alpha
Helix 6
6
A
108 124Right-handed alpha
Helix 7
7
A
136 139Right-handed 310
Helix 8
8
A
140 156Right-handed alpha
Helix 9
9
A
166 174Right-handed alpha
Helix 10
10
A
175 177Right-handed 310
Helix 11
11
A
178 203Right-handed alpha
Helix 12
12
A
210 219Right-handed alpha
Helix 13
13
A
235 246Right-handed alpha
Helix 14
14
A
247 251Right-handed 310
Helix 15
15
A
254 258Right-handed 310
Helix 16
16
A
272 287Right-handed alpha
Helix 17
17
B
20 33Right-handed alpha
Helix 18
18
B
47 51Right-handed 310
Helix 19
19
B
62 67Right-handed alpha
Helix 20
20
B
74 85Right-handed alpha
Helix 21
21
B
85 94Right-handed alpha
Helix 22
22
B
108 124Right-handed alpha
Helix 23
23
B
136 139Right-handed 310
Helix 24
24
B
140 156Right-handed alpha
Helix 25
25
B
166 174Right-handed alpha
Helix 26
26
B
175 177Right-handed 310
Helix 27
27
B
178 203Right-handed alpha
Helix 28
28
B
210 219Right-handed alpha
Helix 29
29
B
235 246Right-handed alpha
Helix 30
30
B
247 251Right-handed 310
Helix 31
31
B
254 258Right-handed 310
Helix 32
32
B
272 287Right-handed alpha
Helix 33
33
X
54 70Right-handed alpha
Helix 34
34
X
88 95Right-handed alpha
Helix 35
35
X
109 124Right-handed alpha
Helix 36
36
X
137 152Right-handed alpha
Helix 37
37
Y
54 71Right-handed alpha
Helix 38
38
Y
88 95Right-handed alpha
Helix 39
39
Y
109 123Right-handed alpha
Helix 40
40
Y
137 152Right-handed alpha
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There are 3 sheets in PDB entry 1OFU. Click on sheet of interest to get list of strands forming it: AA, BA, XA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
38 44parallel
Strand 3
A
14 19parallel
Strand 4
A
98 104parallel
Strand 5
A
127 134parallel
Strand 6
A
160 165parallel
Strand 7
A
222 232parallel
Strand 8
A
306 314anti-parallel
Strand 9
A
260 267anti-parallel
Strand 10
A
292 299parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
39 44parallel
Strand 3
B
14 19parallel
Strand 4
B
98 104parallel
Strand 5
B
127 134parallel
Strand 6
B
160 165parallel
Strand 7
B
222 231parallel
Strand 8
B
307 314anti-parallel
Strand 9
B
260 267anti-parallel
Strand 10
B
292 299parallel
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There are 10 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
102 105first strand
Strand 2
X
77 81parallel
Strand 3
X
126 131parallel
Strand 4
X
154 159parallel
Strand 5
X
45 52parallel
Strand 6
Y
46 52anti-parallel
Strand 7
Y
154 161parallel
Strand 8
Y
126 131parallel
Strand 9
Y
77 81parallel
Strand 10
Y
102 105parallel
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