Analysis of interatomic Contacts of Structural Units in PDB entry:
1OFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OFV entry

There is 1 chain in PDB entry 1OFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1OFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
40 46Right-handed 310
Helix 3
3
A
63 69Right-handed alpha
Helix 4
4
A
69 75Right-handed 310
Helix 5
5
A
100 111Right-handed alpha
Helix 6
6
A
151 165Right-handed alpha
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There are 2 sheets in PDB entry 1OFV. Click on sheet of interest to get list of strands forming it: B1, B2,

There are 5 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
3 7parallel
Strand 3
A
49 53parallel
Strand 4
A
82 88parallel
Strand 5
A
115 116parallel
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There are 5 strands in B2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
3 7parallel
Strand 3
A
49 53parallel
Strand 4
A
82 88parallel
Strand 5
A
141 143parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il