Analysis of interatomic Contacts of Structural Units in PDB entry:
1OGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OGF entry

There are 5 chains in PDB entry 1OGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 131
B
 MET 1PHE 131
C
 MET 1PHE 131
D
 MET 1PHE 131
E
 MET 1PHE 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 1OGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
50 62Right-handed alpha
Helix 3
3
A
71 77Right-handed alpha
Helix 4
4
A
77 88Right-handed alpha
Helix 5
5
A
97 105Right-handed alpha
Helix 6
6
A
106 108Right-handed 310
Helix 7
7
B
8 17Right-handed alpha
Helix 8
8
B
50 62Right-handed alpha
Helix 9
9
B
71 77Right-handed alpha
Helix 10
10
B
77 88Right-handed alpha
Helix 11
11
B
97 105Right-handed alpha
Helix 12
12
B
106 108Right-handed 310
Helix 13
13
C
8 18Right-handed alpha
Helix 14
14
C
50 62Right-handed alpha
Helix 15
15
C
71 77Right-handed alpha
Helix 16
16
C
77 88Right-handed alpha
Helix 17
17
C
97 105Right-handed alpha
Helix 18
18
C
106 108Right-handed 310
Helix 19
19
D
8 18Right-handed alpha
Helix 20
20
D
50 62Right-handed alpha
Helix 21
21
D
71 77Right-handed alpha
Helix 22
22
D
77 88Right-handed alpha
Helix 23
23
D
97 105Right-handed alpha
Helix 24
24
D
106 108Right-handed 310
Helix 25
25
E
8 18Right-handed alpha
Helix 26
26
E
50 62Right-handed alpha
Helix 27
27
E
71 77Right-handed alpha
Helix 28
28
E
77 88Right-handed alpha
Helix 29
29
E
97 105Right-handed alpha
Helix 30
30
E
106 108Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 1OGF. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
110 113parallel
Strand 3
A
23 27parallel
Strand 4
A
123 127anti-parallel
Strand 5
A
64 70anti-parallel
Strand 6
A
92 96parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
110 113parallel
Strand 3
B
23 27parallel
Strand 4
B
123 127anti-parallel
Strand 5
B
64 70anti-parallel
Strand 6
B
92 96parallel
Back to list of sheets
Back to top of page

There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
110 113parallel
Strand 3
C
23 27parallel
Strand 4
C
123 127anti-parallel
Strand 5
C
64 70anti-parallel
Strand 6
C
92 96parallel
Back to list of sheets
Back to top of page

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 41first strand
Strand 2
D
110 113parallel
Strand 3
D
23 27parallel
Strand 4
D
123 127anti-parallel
Strand 5
D
64 70anti-parallel
Strand 6
D
92 96parallel
Back to list of sheets
Back to top of page

There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 41first strand
Strand 2
E
110 113parallel
Strand 3
E
23 27parallel
Strand 4
E
123 127anti-parallel
Strand 5
E
64 70anti-parallel
Strand 6
E
92 96parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il