Analysis of interatomic Contacts of Structural Units in PDB entry:
1OGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OGK entry

There are 4 chains in PDB entry 1OGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10ASP 280
B
 PRO 11LEU 279
D
 PRO 11LEU 279
E
 VAL 10ASP 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 1OGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 30Right-handed alpha
Helix 2
2
A
32 37Right-handed alpha
Helix 3
3
A
38 56Right-handed alpha
Helix 4
4
A
70 92Right-handed alpha
Helix 5
5
A
103 111Right-handed alpha
Helix 6
6
A
139 144Right-handed alpha
Helix 7
7
A
152 169Right-handed alpha
Helix 8
8
A
171 186Right-handed alpha
Helix 9
9
A
189 206Right-handed alpha
Helix 10
10
A
222 233Right-handed alpha
Helix 11
11
A
235 241Right-handed alpha
Helix 12
12
A
244 261Right-handed alpha
Helix 13
13
A
263 268Right-handed 310
Helix 14
14
A
271 277Right-handed alpha
Helix 15
15
B
12 30Right-handed alpha
Helix 16
16
B
32 37Right-handed alpha
Helix 17
17
B
38 56Right-handed alpha
Helix 18
18
B
70 92Right-handed alpha
Helix 19
19
B
102 112Right-handed alpha
Helix 20
20
B
152 169Right-handed alpha
Helix 21
21
B
171 186Right-handed alpha
Helix 22
22
B
189 207Right-handed alpha
Helix 23
23
B
223 232Right-handed alpha
Helix 24
24
B
235 241Right-handed alpha
Helix 25
25
B
244 260Right-handed alpha
Helix 26
26
B
263 266Right-handed 310
Helix 27
27
B
267 276Right-handed alpha
Helix 28
28
D
12 30Right-handed alpha
Helix 29
29
D
32 37Right-handed alpha
Helix 30
30
D
38 56Right-handed alpha
Helix 31
31
D
70 90Right-handed alpha
Helix 32
32
D
107 112Right-handed alpha
Helix 33
33
D
140 146Right-handed alpha
Helix 34
34
D
152 169Right-handed alpha
Helix 35
35
D
171 186Right-handed alpha
Helix 36
36
D
189 206Right-handed alpha
Helix 37
37
D
222 232Right-handed alpha
Helix 38
38
D
244 261Right-handed alpha
Helix 39
39
D
267 277Right-handed alpha
Helix 40
40
E
11 30Right-handed alpha
Helix 41
41
E
32 37Right-handed alpha
Helix 42
42
E
38 55Right-handed alpha
Helix 43
43
E
70 92Right-handed alpha
Helix 44
44
E
102 112Right-handed alpha
Helix 45
45
E
152 169Right-handed alpha
Helix 46
46
E
171 187Right-handed alpha
Helix 47
47
E
189 207Right-handed alpha
Helix 48
48
E
226 232Right-handed alpha
Helix 49
49
E
235 241Right-handed alpha
Helix 50
50
E
244 260Right-handed alpha
Helix 51
51
E
263 266Right-handed 310
Helix 52
52
E
267 274Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1OGK. Click on sheet of interest to get list of strands forming it: BA, EA,

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
221 222anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
217 218first strand
Strand 2
E
221 222anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il