Analysis of interatomic Contacts of Structural Units in PDB entry:
1OGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OGM entry

There is 1 chain in PDB entry 1OGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 THR 3SER 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1OGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
61 66Right-handed 310
Helix 2
2
X
91 96Right-handed 310
Helix 3
3
X
124 126Right-handed 310
Helix 4
4
X
203 207Right-handed 310
Helix 5
5
X
565 568Right-handed 310
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There are 10 sheets in PDB entry 1OGM. Click on sheet of interest to get list of strands forming it: XA, XB, XC, XD, XE, XF, XG, XH, XI, XJ,

There are 3 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
13 14first strand
Strand 2
X
98 106anti-parallel
Strand 3
X
58 60anti-parallel
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There are 5 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
13 14first strand
Strand 2
X
98 106anti-parallel
Strand 3
X
192 199parallel
Strand 4
X
158 164anti-parallel
Strand 5
X
128 131anti-parallel
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There are 2 strands in XC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
21 22first strand
Strand 2
X
34 35parallel
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There are 5 strands in XD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
53 55first strand
Strand 2
X
40 46anti-parallel
Strand 3
X
110 116anti-parallel
Strand 4
X
147 151anti-parallel
Strand 5
X
138 141anti-parallel
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There are 3 strands in XE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
178 179first strand
Strand 2
X
168 173anti-parallel
Strand 3
X
184 190anti-parallel
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There are 11 strands in XF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
215 217first strand
Strand 2
X
233 236parallel
Strand 3
X
267 270parallel
Strand 4
X
288 291parallel
Strand 5
X
333 338parallel
Strand 6
X
358 368parallel
Strand 7
X
341 343parallel
Strand 8
X
295 297parallel
Strand 9
X
274 277parallel
Strand 10
X
239 243parallel
Strand 11
X
221 223parallel
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There are 12 strands in XG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
215 217first strand
Strand 2
X
233 236parallel
Strand 3
X
267 270parallel
Strand 4
X
288 291parallel
Strand 5
X
333 338parallel
Strand 6
X
358 368parallel
Strand 7
X
385 393parallel
Strand 8
X
406 414parallel
Strand 9
X
430 442parallel
Strand 10
X
470 484parallel
Strand 11
X
498 510parallel
Strand 12
X
534 543parallel
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There are 4 strands in XH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
259 260first strand
Strand 2
X
280 282parallel
Strand 3
X
324 326parallel
Strand 4
X
350 352parallel
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There are 4 strands in XI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
398 399first strand
Strand 2
X
421 422parallel
Strand 3
X
455 459parallel
Strand 4
X
490 494parallel
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There are 2 strands in XJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
524 526first strand
Strand 2
X
561 563parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il