Analysis of interatomic Contacts of Structural Units in PDB entry:
1OGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1OGP entry

There are 6 chains in PDB entry 1OGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLY 389
B	PRO 2	GLY 389
C	PRO 2	GLY 389
D	PRO 2	GLY 389
E	PRO 2	GLY 389
F	PRO 2	GLY 389

There are 72 helices in PDB entry 1OGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	33	38	Right-handed alpha
Helix 2	2	A	44	48	Right-handed 310
Helix 3	3	A	81	86	Right-handed alpha
Helix 4	4	A	102	110	Right-handed alpha
Helix 5	5	A	132	138	Right-handed alpha
Helix 6	6	A	163	167	Right-handed 310
Helix 7	7	A	177	182	Right-handed alpha
Helix 8	8	A	183	186	Right-handed 310
Helix 9	9	A	214	218	Right-handed 310
Helix 10	10	A	234	239	Right-handed alpha
Helix 11	11	A	254	258	Right-handed 310
Helix 12	12	A	366	371	Right-handed alpha
Helix 13	13	B	33	38	Right-handed alpha
Helix 14	14	B	44	48	Right-handed 310
Helix 15	15	B	81	86	Right-handed alpha
Helix 16	16	B	102	110	Right-handed alpha
Helix 17	17	B	132	138	Right-handed alpha
Helix 18	18	B	163	167	Right-handed 310
Helix 19	19	B	177	182	Right-handed alpha
Helix 20	20	B	183	186	Right-handed 310
Helix 21	21	B	214	218	Right-handed 310
Helix 22	22	B	234	239	Right-handed alpha
Helix 23	23	B	254	258	Right-handed 310
Helix 24	24	B	366	370	Right-handed 310
Helix 25	25	C	33	38	Right-handed alpha
Helix 26	26	C	44	48	Right-handed 310
Helix 27	27	C	81	86	Right-handed alpha
Helix 28	28	C	102	110	Right-handed alpha
Helix 29	29	C	132	138	Right-handed alpha
Helix 30	30	C	163	167	Right-handed 310
Helix 31	31	C	177	182	Right-handed alpha
Helix 32	32	C	183	186	Right-handed 310
Helix 33	33	C	214	218	Right-handed 310
Helix 34	34	C	234	239	Right-handed alpha
Helix 35	35	C	254	258	Right-handed 310
Helix 36	36	C	366	371	Right-handed alpha
Helix 37	37	D	33	38	Right-handed alpha
Helix 38	38	D	44	48	Right-handed 310
Helix 39	39	D	81	86	Right-handed alpha
Helix 40	40	D	102	110	Right-handed alpha
Helix 41	41	D	132	138	Right-handed alpha
Helix 42	42	D	163	167	Right-handed 310
Helix 43	43	D	177	182	Right-handed alpha
Helix 44	44	D	183	186	Right-handed 310
Helix 45	45	D	214	218	Right-handed 310
Helix 46	46	D	234	239	Right-handed alpha
Helix 47	47	D	254	258	Right-handed 310
Helix 48	48	D	366	371	Right-handed alpha
Helix 49	49	E	33	38	Right-handed alpha
Helix 50	50	E	44	48	Right-handed 310
Helix 51	51	E	81	86	Right-handed alpha
Helix 52	52	E	102	110	Right-handed alpha
Helix 53	53	E	132	138	Right-handed alpha
Helix 54	54	E	163	167	Right-handed 310
Helix 55	55	E	177	182	Right-handed alpha
Helix 56	56	E	183	186	Right-handed 310
Helix 57	57	E	214	218	Right-handed 310
Helix 58	58	E	234	239	Right-handed alpha
Helix 59	59	E	254	258	Right-handed 310
Helix 60	60	E	366	371	Right-handed alpha
Helix 61	61	F	33	38	Right-handed alpha
Helix 62	62	F	44	48	Right-handed 310
Helix 63	63	F	81	86	Right-handed alpha
Helix 64	64	F	102	110	Right-handed alpha
Helix 65	65	F	132	138	Right-handed alpha
Helix 66	66	F	163	167	Right-handed 310
Helix 67	67	F	177	182	Right-handed alpha
Helix 68	68	F	183	186	Right-handed 310
Helix 69	69	F	214	218	Right-handed 310
Helix 70	70	F	234	239	Right-handed alpha
Helix 71	71	F	254	258	Right-handed 310
Helix 72	72	F	366	371	Right-handed alpha

There are 39 sheets in PDB entry 1OGP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, FF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	58	59	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	29	31	anti-parallel
Strand 3	A	50	51	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	66	71	anti-parallel
Strand 3	A	222	228	parallel
Strand 4	A	154	159	anti-parallel
Strand 5	A	172	176	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	97	first strand
Strand 2	A	122	131	anti-parallel
Strand 3	A	188	193	anti-parallel
Strand 4	A	207	209	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	97	first strand
Strand 2	A	122	131	anti-parallel
Strand 3	A	188	193	anti-parallel
Strand 4	A	196	197	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	282	291	anti-parallel
Strand 3	A	337	345	anti-parallel
Strand 4	A	315	317	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	382	387	parallel
Strand 3	A	349	357	anti-parallel
Strand 4	A	298	304	anti-parallel
Strand 5	A	312	313	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	58	59	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	29	31	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	66	71	anti-parallel
Strand 3	B	222	228	parallel
Strand 4	B	154	159	anti-parallel
Strand 5	B	172	176	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	97	first strand
Strand 2	B	122	131	anti-parallel
Strand 3	B	188	193	anti-parallel
Strand 4	B	207	209	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	97	first strand
Strand 2	B	122	131	anti-parallel
Strand 3	B	188	193	anti-parallel
Strand 4	B	196	197	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	270	first strand
Strand 2	B	282	291	anti-parallel
Strand 3	B	337	345	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 5 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	382	387	parallel
Strand 3	B	349	357	anti-parallel
Strand 4	B	298	304	anti-parallel
Strand 5	B	312	313	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	58	59	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	24	first strand
Strand 2	C	29	31	anti-parallel
Strand 3	C	50	51	anti-parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	222	228	parallel
Strand 4	C	154	159	anti-parallel
Strand 5	C	172	176	anti-parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	97	first strand
Strand 2	C	122	131	anti-parallel
Strand 3	C	188	193	anti-parallel
Strand 4	C	207	209	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	97	first strand
Strand 2	C	122	131	anti-parallel
Strand 3	C	188	193	anti-parallel
Strand 4	C	196	197	anti-parallel

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There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	270	first strand
Strand 2	C	282	291	anti-parallel
Strand 3	C	337	345	anti-parallel
Strand 4	C	315	317	anti-parallel

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There are 5 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	382	387	parallel
Strand 3	C	349	357	anti-parallel
Strand 4	C	298	304	anti-parallel
Strand 5	C	312	313	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	58	59	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	29	31	anti-parallel
Strand 3	D	50	51	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	66	71	anti-parallel
Strand 3	D	222	228	parallel
Strand 4	D	154	159	anti-parallel
Strand 5	D	172	176	anti-parallel

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There are 7 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	97	first strand
Strand 2	D	122	131	anti-parallel
Strand 3	D	188	193	anti-parallel
Strand 4	D	196	197	anti-parallel
Strand 5	D	188	193	anti-parallel
Strand 6	D	207	209	anti-parallel
Strand 7	D	188	193	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	270	first strand
Strand 2	D	282	291	anti-parallel
Strand 3	D	337	345	anti-parallel
Strand 4	D	315	317	anti-parallel

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There are 5 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	278	first strand
Strand 2	D	382	387	parallel
Strand 3	D	349	357	anti-parallel
Strand 4	D	298	304	anti-parallel
Strand 5	D	312	313	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	58	59	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	24	first strand
Strand 2	E	29	31	anti-parallel
Strand 3	E	50	51	anti-parallel

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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	66	71	anti-parallel
Strand 3	E	222	228	parallel
Strand 4	E	154	159	anti-parallel
Strand 5	E	172	176	anti-parallel

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There are 7 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	97	first strand
Strand 2	E	122	131	anti-parallel
Strand 3	E	188	193	anti-parallel
Strand 4	E	196	197	anti-parallel
Strand 5	E	188	193	anti-parallel
Strand 6	E	207	209	anti-parallel
Strand 7	E	188	193	anti-parallel

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There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	270	first strand
Strand 2	E	282	291	anti-parallel
Strand 3	E	337	345	anti-parallel
Strand 4	E	315	317	anti-parallel

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There are 5 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	278	first strand
Strand 2	E	382	387	parallel
Strand 3	E	349	357	anti-parallel
Strand 4	E	298	304	anti-parallel
Strand 5	E	312	313	anti-parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	58	59	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	24	first strand
Strand 2	F	29	31	anti-parallel
Strand 3	F	50	51	anti-parallel

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There are 5 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	80	first strand
Strand 2	F	66	71	anti-parallel
Strand 3	F	222	228	parallel
Strand 4	F	154	159	anti-parallel
Strand 5	F	172	176	anti-parallel

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There are 7 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	97	first strand
Strand 2	F	122	131	anti-parallel
Strand 3	F	188	193	anti-parallel
Strand 4	F	196	197	anti-parallel
Strand 5	F	188	193	anti-parallel
Strand 6	F	207	209	anti-parallel
Strand 7	F	188	193	anti-parallel

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There are 4 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	267	270	first strand
Strand 2	F	282	291	anti-parallel
Strand 3	F	337	345	anti-parallel
Strand 4	F	315	317	anti-parallel

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There are 5 strands in FF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	278	first strand
Strand 2	F	382	387	parallel
Strand 3	F	349	357	anti-parallel
Strand 4	F	298	304	anti-parallel
Strand 5	F	312	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1OGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
1OGP