Analysis of interatomic Contacts of Structural Units in PDB entry:
1OH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OH9 entry

There is 1 chain in PDB entry 1OH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1OH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 32Right-handed alpha
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
72 82Right-handed alpha
Helix 5
5
A
82 95Right-handed alpha
Helix 6
6
A
105 108Right-handed 310
Helix 7
7
A
116 119Right-handed 310
Helix 8
8
A
130 139Right-handed alpha
Helix 9
9
A
160 173Right-handed alpha
Helix 10
10
A
197 207Right-handed alpha
Helix 11
11
A
212 229Right-handed alpha
Helix 12
12
A
239 241Right-handed 310
Helix 13
13
A
242 248Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1OH9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
142 146parallel
Strand 3
A
38 42parallel
Strand 4
A
5 9parallel
Strand 5
A
175 180parallel
Strand 6
A
232 236parallel
Strand 7
A
254 256anti-parallel
Strand 8
A
195 196parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
123 127anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
156 158anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il