Analysis of interatomic Contacts of Structural Units in PDB entry:
1OI7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OI7 entry

There is 1 chain in PDB entry 1OI7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1OI7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
55 63Right-handed alpha
Helix 3
3
A
73 87Right-handed alpha
Helix 4
4
A
100 115Right-handed alpha
Helix 5
5
A
138 142Right-handed 310
Helix 6
6
A
153 167Right-handed alpha
Helix 7
7
A
186 196Right-handed alpha
Helix 8
8
A
212 225Right-handed alpha
Helix 9
9
A
257 269Right-handed alpha
Helix 10
10
A
275 288Right-handed alpha
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There are 2 sheets in PDB entry 1OI7. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
33 38parallel
Strand 4
A
9 13parallel
Strand 5
A
67 70parallel
Strand 6
A
91 94parallel
Strand 7
A
117 120parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
171 176anti-parallel
Strand 4
A
147 151parallel
Strand 5
A
202 207parallel
Strand 6
A
229 233parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il