Analysis of interatomic Contacts of Structural Units in PDB entry:
1OIL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OIL entry

There are 2 chains in PDB entry 1OIL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 320
B
 ALA 1VAL 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1OIL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 25Right-handed 310
Helix 2
2
A
33 39Right-handed alpha
Helix 3
3
A
61 76Right-handed alpha
Helix 4
4
A
87 99Right-handed 310
Helix 5
5
A
101 103Right-handed 310
Helix 6
6
A
118 129Right-handed alpha
Helix 7
7
A
134 150Right-handed alpha
Helix 8
8
A
160 167Right-handed alpha
Helix 9
9
A
169 178Right-handed alpha
Helix 10
10
A
237 241Right-handed 310
Helix 11
11
A
244 258Right-handed alpha
Helix 12
12
A
269 272Right-handed alpha
Helix 13
13
A
288 290Right-handed 310
Helix 14
14
A
304 318Right-handed alpha
Helix 15
15
B
23 25Right-handed 310
Helix 16
16
B
33 39Right-handed alpha
Helix 17
17
B
61 76Right-handed alpha
Helix 18
18
B
87 99Right-handed 310
Helix 19
19
B
101 103Right-handed 310
Helix 20
20
B
118 129Right-handed alpha
Helix 21
21
B
134 150Right-handed alpha
Helix 22
22
B
160 166Right-handed alpha
Helix 23
23
B
169 178Right-handed alpha
Helix 24
24
B
237 241Right-handed 310
Helix 25
25
B
243 258Right-handed alpha
Helix 26
26
B
269 272Right-handed alpha
Helix 27
27
B
288 290Right-handed 310
Helix 28
28
B
304 318Right-handed alpha
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There are 6 sheets in PDB entry 1OIL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
10 14parallel
Strand 3
A
81 86parallel
Strand 4
A
104 110parallel
Strand 5
A
202 209parallel
Strand 6
A
196 199anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
226 228anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
10 14parallel
Strand 3
B
81 86parallel
Strand 4
B
104 110parallel
Strand 5
B
202 209parallel
Strand 6
B
196 199anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
226 228anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
276 279parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
276 279parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il