Analysis of interatomic Contacts of Structural Units in PDB entry:
1OIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OIP entry

There is 1 chain in PDB entry 1OIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 25GLU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1OIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 39Right-handed alpha
Helix 2
2
A
48 59Right-handed alpha
Helix 3
3
A
62 80Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
88 91Right-handed 310
Helix 6
6
A
92 98Right-handed alpha
Helix 7
7
A
120 122Right-handed 310
Helix 8
8
A
128 144Right-handed alpha
Helix 9
9
A
146 153Right-handed alpha
Helix 10
10
A
164 170Right-handed alpha
Helix 11
11
A
172 185Right-handed alpha
Helix 12
12
A
200 202Right-handed 310
Helix 13
13
A
203 211Right-handed alpha
Helix 14
14
A
212 214Right-handed 310
Helix 15
15
A
215 220Right-handed alpha
Helix 16
16
A
229 237Right-handed alpha
Helix 17
17
A
242 246Right-handed 310
Helix 18
18
A
251 266Right-handed alpha
Helix 19
19
A
266 273Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 1OIP.

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
113 118anti-parallel
Strand 3
A
154 159parallel
Strand 4
A
191 197parallel
Strand 5
A
222 226parallel
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