Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJ0 entry

There is 1 chain in PDB entry 1OJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1OJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 27Right-handed alpha
Helix 2
2
A
46 51Right-handed 310
Helix 3
3
A
69 77Right-handed alpha
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
86 88Right-handed 310
Helix 6
6
A
102 107Right-handed alpha
Helix 7
7
A
108 125Right-handed alpha
Helix 8
8
A
141 159Right-handed alpha
Helix 9
9
A
181 193Right-handed alpha
Helix 10
10
A
203 213Right-handed alpha
Helix 11
11
A
221 236Right-handed alpha
Helix 12
12
A
249 258Right-handed alpha
Helix 13
13
A
286 294Right-handed alpha
Helix 14
14
A
304 308Right-handed 310
Helix 15
15
A
322 337Right-handed alpha
Helix 16
16
A
374 390Right-handed alpha
Helix 17
17
A
392 394Right-handed 310
Helix 18
18
A
395 400Right-handed alpha
Helix 19
19
A
404 427Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1OJ0. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
63 67parallel
Strand 3
A
4 9parallel
Strand 4
A
132 138parallel
Strand 5
A
163 166parallel
Strand 6
A
198 200parallel
Strand 7
A
265 269parallel
Strand 8
A
365 371anti-parallel
Strand 9
A
310 318anti-parallel
Strand 10
A
349 354parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
63 67parallel
Strand 3
A
4 9parallel
Strand 4
A
132 138parallel
Strand 5
A
168 169parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il