Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJ4 entry

There are 2 chains in PDB entry 1OJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 283
B
 MSE 1LEU 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1OJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 64Right-handed 310
Helix 2
2
A
65 81Right-handed alpha
Helix 3
3
A
105 122Right-handed alpha
Helix 4
4
A
127 136Right-handed alpha
Helix 5
5
A
137 139Right-handed 310
Helix 6
6
A
141 148Right-handed alpha
Helix 7
7
A
180 186Right-handed alpha
Helix 8
8
A
198 205Right-handed alpha
Helix 9
9
A
211 219Right-handed alpha
Helix 10
10
A
219 230Right-handed alpha
Helix 11
11
A
250 261Right-handed alpha
Helix 12
12
A
262 266Right-handed 310
Helix 13
13
A
276 281Right-handed alpha
Helix 14
14
B
61 64Right-handed 310
Helix 15
15
B
65 81Right-handed alpha
Helix 16
16
B
105 122Right-handed alpha
Helix 17
17
B
129 139Right-handed alpha
Helix 18
18
B
141 148Right-handed alpha
Helix 19
19
B
180 186Right-handed alpha
Helix 20
20
B
198 205Right-handed alpha
Helix 21
21
B
211 219Right-handed alpha
Helix 22
22
B
219 231Right-handed alpha
Helix 23
23
B
250 261Right-handed alpha
Helix 24
24
B
262 266Right-handed 310
Helix 25
25
B
276 281Right-handed alpha
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There are 4 sheets in PDB entry 1OJ4. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 20first strand
Strand 2
A
26 46anti-parallel
Strand 3
A
151 154anti-parallel
Strand 4
A
159 162anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 20first strand
Strand 2
A
26 46anti-parallel
Strand 3
A
268 273anti-parallel
Strand 4
A
169 173anti-parallel
Strand 5
A
244 248anti-parallel
Strand 6
A
235 237anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 20first strand
Strand 2
B
26 46anti-parallel
Strand 3
B
151 154anti-parallel
Strand 4
B
159 162anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 20first strand
Strand 2
B
26 46anti-parallel
Strand 3
B
268 273anti-parallel
Strand 4
B
169 173anti-parallel
Strand 5
B
244 248anti-parallel
Strand 6
B
235 237anti-parallel
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