Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJ6 entry

There are 4 chains in PDB entry 1OJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3ASP 149
B
 MET 1GLU 151
C
 PRO 4GLU 151
D
 MET 1GLY 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 1OJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
19 35Right-handed alpha
Helix 3
3
A
36 42Right-handed 310
Helix 4
4
A
51 56Right-handed alpha
Helix 5
5
A
58 78Right-handed alpha
Helix 6
6
A
81 84Right-handed 310
Helix 7
7
A
85 99Right-handed alpha
Helix 8
8
A
104 122Right-handed alpha
Helix 9
9
A
123 125Right-handed 310
Helix 10
10
A
126 145Right-handed alpha
Helix 11
11
A
146 148Right-handed 310
Helix 12
12
B
5 17Right-handed alpha
Helix 13
13
B
19 35Right-handed alpha
Helix 14
14
B
36 42Right-handed 310
Helix 15
15
B
51 56Right-handed alpha
Helix 16
16
B
58 78Right-handed alpha
Helix 17
17
B
81 84Right-handed 310
Helix 18
18
B
85 98Right-handed alpha
Helix 19
19
B
104 122Right-handed alpha
Helix 20
20
B
123 125Right-handed 310
Helix 21
21
B
126 148Right-handed alpha
Helix 22
22
C
5 18Right-handed alpha
Helix 23
23
C
19 35Right-handed alpha
Helix 24
24
C
36 42Right-handed 310
Helix 25
25
C
51 56Right-handed alpha
Helix 26
26
C
58 78Right-handed alpha
Helix 27
27
C
81 84Right-handed 310
Helix 28
28
C
85 99Right-handed alpha
Helix 29
29
C
104 122Right-handed alpha
Helix 30
30
C
123 125Right-handed 310
Helix 31
31
C
126 145Right-handed alpha
Helix 32
32
C
146 148Right-handed 310
Helix 33
33
D
5 17Right-handed alpha
Helix 34
34
D
19 35Right-handed alpha
Helix 35
35
D
36 43Right-handed 310
Helix 36
36
D
58 78Right-handed alpha
Helix 37
37
D
79 84Right-handed 310
Helix 38
38
D
85 100Right-handed alpha
Helix 39
39
D
104 122Right-handed alpha
Helix 40
40
D
123 125Right-handed 310
Helix 41
41
D
126 145Right-handed alpha
Helix 42
42
D
146 149Right-handed 310
Back to top of page
There are no sheets in PDB entry 1OJ6
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il