Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJJ entry

There are 2 chains in PDB entry 1OJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLN 399
B
 LYS 2GLN 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1OJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 38Right-handed 310
Helix 2
2
A
65 72Right-handed alpha
Helix 3
3
A
80 84Right-handed 310
Helix 4
4
A
163 168Right-handed 310
Helix 5
5
A
224 229Right-handed 310
Helix 6
6
A
242 247Right-handed 310
Helix 7
7
A
311 318Right-handed alpha
Helix 8
8
A
320 326Right-handed alpha
Helix 9
9
A
327 339Right-handed alpha
Helix 10
10
A
354 359Right-handed alpha
Helix 11
11
A
360 363Right-handed 310
Helix 12
12
A
371 379Right-handed alpha
Helix 13
13
B
35 38Right-handed 310
Helix 14
14
B
65 72Right-handed alpha
Helix 15
15
B
80 84Right-handed 310
Helix 16
16
B
163 168Right-handed 310
Helix 17
17
B
224 229Right-handed 310
Helix 18
18
B
242 247Right-handed 310
Helix 19
19
B
311 318Right-handed alpha
Helix 20
20
B
320 326Right-handed alpha
Helix 21
21
B
327 339Right-handed alpha
Helix 22
22
B
354 359Right-handed alpha
Helix 23
23
B
360 363Right-handed 310
Helix 24
24
B
371 379Right-handed alpha
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There are 12 sheets in PDB entry 1OJJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
383 392anti-parallel
Strand 4
A
12 19parallel
Strand 5
A
23 33anti-parallel
Strand 6
A
108 112anti-parallel
Strand 7
A
340 347anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
383 392anti-parallel
Strand 4
A
128 134anti-parallel
Strand 5
A
266 274anti-parallel
Strand 6
A
280 289anti-parallel
Strand 7
A
292 294anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
73 75anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
192 194anti-parallel
Strand 3
A
221 223anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
185 186anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
260 261parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
383 392anti-parallel
Strand 4
B
12 19parallel
Strand 5
B
23 33anti-parallel
Strand 6
B
108 112anti-parallel
Strand 7
B
341 347anti-parallel
Strand 8
B
143 149anti-parallel
Strand 9
B
197 203anti-parallel
Strand 10
B
208 213anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
383 392anti-parallel
Strand 4
B
128 134anti-parallel
Strand 5
B
266 274anti-parallel
Strand 6
B
280 289anti-parallel
Strand 7
B
292 294anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
73 75anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
192 194anti-parallel
Strand 3
B
221 223anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 182first strand
Strand 2
B
185 186anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
260 261parallel
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