Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJL entry

There are 6 chains in PDB entry 1OJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 140ARG 441
B
 SER 139THR 389
C
 SER 139PRO 390
D
 HIS 140ARG 441
E
 HIS 140ARG 441
F
 HIS 140THR 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 1OJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
145 159Right-handed alpha
Helix 2
2
A
174 186Right-handed alpha
Helix 3
3
A
202 211Right-handed alpha
Helix 4
4
A
227 233Right-handed alpha
Helix 5
5
A
246 259Right-handed alpha
Helix 6
6
A
284 292Right-handed alpha
Helix 7
7
A
295 303Right-handed alpha
Helix 8
8
A
312 317Right-handed 310
Helix 9
9
A
318 334Right-handed alpha
Helix 10
10
A
342 352Right-handed alpha
Helix 11
11
A
356 372Right-handed alpha
Helix 12
12
A
378 382Right-handed 310
Helix 13
13
A
383 387Right-handed 310
Helix 14
14
A
401 416Right-handed alpha
Helix 15
15
A
420 429Right-handed alpha
Helix 16
16
A
431 439Right-handed alpha
Helix 17
17
B
145 159Right-handed alpha
Helix 18
18
B
174 186Right-handed alpha
Helix 19
19
B
202 211Right-handed alpha
Helix 20
20
B
227 233Right-handed alpha
Helix 21
21
B
241 245Right-handed 310
Helix 22
22
B
246 259Right-handed alpha
Helix 23
23
B
284 291Right-handed alpha
Helix 24
24
B
295 303Right-handed alpha
Helix 25
25
B
311 316Right-handed 310
Helix 26
26
B
318 334Right-handed alpha
Helix 27
27
B
342 352Right-handed alpha
Helix 28
28
B
356 372Right-handed alpha
Helix 29
29
B
378 382Right-handed 310
Helix 30
30
C
145 159Right-handed alpha
Helix 31
31
C
174 186Right-handed alpha
Helix 32
32
C
202 211Right-handed alpha
Helix 33
33
C
227 233Right-handed alpha
Helix 34
34
C
246 259Right-handed alpha
Helix 35
35
C
284 291Right-handed alpha
Helix 36
36
C
295 303Right-handed alpha
Helix 37
37
C
311 317Right-handed 310
Helix 38
38
C
318 334Right-handed alpha
Helix 39
39
C
342 352Right-handed alpha
Helix 40
40
C
356 372Right-handed alpha
Helix 41
41
C
378 382Right-handed 310
Helix 42
42
C
383 387Right-handed 310
Helix 43
43
D
145 159Right-handed alpha
Helix 44
44
D
174 186Right-handed alpha
Helix 45
45
D
202 211Right-handed alpha
Helix 46
46
D
229 233Right-handed 310
Helix 47
47
D
246 259Right-handed alpha
Helix 48
48
D
284 291Right-handed alpha
Helix 49
49
D
295 303Right-handed alpha
Helix 50
50
D
311 316Right-handed 310
Helix 51
51
D
318 334Right-handed alpha
Helix 52
52
D
342 351Right-handed alpha
Helix 53
53
D
356 372Right-handed alpha
Helix 54
54
D
378 382Right-handed 310
Helix 55
55
D
383 387Right-handed 310
Helix 56
56
D
401 416Right-handed alpha
Helix 57
57
D
420 429Right-handed alpha
Helix 58
58
D
431 439Right-handed alpha
Helix 59
59
E
146 159Right-handed alpha
Helix 60
60
E
174 186Right-handed alpha
Helix 61
61
E
202 211Right-handed alpha
Helix 62
62
E
229 233Right-handed 310
Helix 63
63
E
246 259Right-handed alpha
Helix 64
64
E
284 291Right-handed alpha
Helix 65
65
E
295 303Right-handed alpha
Helix 66
66
E
311 316Right-handed 310
Helix 67
67
E
318 334Right-handed alpha
Helix 68
68
E
342 351Right-handed alpha
Helix 69
69
E
356 372Right-handed alpha
Helix 70
70
E
378 382Right-handed 310
Helix 71
71
E
401 417Right-handed alpha
Helix 72
72
E
420 429Right-handed alpha
Helix 73
73
E
431 439Right-handed alpha
Helix 74
74
F
145 159Right-handed alpha
Helix 75
75
F
174 186Right-handed alpha
Helix 76
76
F
202 211Right-handed alpha
Helix 77
77
F
229 233Right-handed 310
Helix 78
78
F
242 245Right-handed 310
Helix 79
79
F
246 259Right-handed alpha
Helix 80
80
F
284 291Right-handed alpha
Helix 81
81
F
295 303Right-handed alpha
Helix 82
82
F
311 317Right-handed 310
Helix 83
83
F
318 334Right-handed alpha
Helix 84
84
F
342 352Right-handed alpha
Helix 85
85
F
356 372Right-handed alpha
Helix 86
86
F
378 382Right-handed 310
Helix 87
87
F
383 387Right-handed 310
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There are 8 sheets in PDB entry 1OJL. Click on sheet of interest to get list of strands forming it: AA, BA, BB, CA, A, DB, EA, FA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
236 240parallel
Strand 3
A
276 281parallel
Strand 4
A
165 168parallel
Strand 5
A
305 308parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
236 240parallel
Strand 3
B
276 281parallel
Strand 4
B
165 168parallel
Strand 5
B
305 308parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
271 272anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 197first strand
Strand 2
C
236 240parallel
Strand 3
C
276 281parallel
Strand 4
C
165 168parallel
Strand 5
C
305 308parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
193 197first strand
Strand 2
D
236 240parallel
Strand 3
D
276 281parallel
Strand 4
D
165 168parallel
Strand 5
D
305 308parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
261 262first strand
Strand 2
D
271 272anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
193 197first strand
Strand 2
E
235 240parallel
Strand 3
E
275 281parallel
Strand 4
E
165 168parallel
Strand 5
E
305 308parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
195 197first strand
Strand 2
F
236 240parallel
Strand 3
F
276 281parallel
Strand 4
F
165 168parallel
Strand 5
F
305 308parallel
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