Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJR entry

There is 1 chain in PDB entry 1OJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1OJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 6Right-handed 310
Helix 2
2
A
7 24Right-handed alpha
Helix 3
3
A
38 43Right-handed alpha
Helix 4
4
A
44 49Right-handed 310
Helix 5
5
A
62 66Right-handed 310
Helix 6
6
A
78 82Right-handed 310
Helix 7
7
A
85 89Right-handed alpha
Helix 8
8
A
117 132Right-handed alpha
Helix 9
9
A
144 151Right-handed alpha
Helix 10
10
A
157 168Right-handed alpha
Helix 11
11
A
171 176Right-handed alpha
Helix 12
12
A
190 202Right-handed alpha
Helix 13
13
A
220 244Right-handed alpha
Helix 14
14
A
252 264Right-handed alpha
Helix 15
15
A
268 273Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 1OJR.

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
32 36anti-parallel
Strand 6
A
138 142anti-parallel
Strand 7
A
213 218anti-parallel
Strand 8
A
206 209anti-parallel
Strand 9
A
180 182parallel
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