Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJT entry

There is 1 chain in PDB entry 1OJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 117LYS 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1OJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
HA1
A
132 143Right-handed alpha
Helix 2
HA2
A
159 188Right-handed alpha
Helix 3
HA3
A
199 223Right-handed alpha
Helix 4
HB1
A
291 294Right-handed alpha
Helix 5
HB2
A
311 323Right-handed alpha
Helix 6
HB3
A
342 355Right-handed alpha
Helix 7
HC1
A
448 462Right-handed alpha
Helix 8
HC2
A
491 497Right-handed alpha
Helix 9
HC3
A
512 517Right-handed alpha
Helix 10
HD1
A
545 558Right-handed alpha
Helix 11
HD2
A
562 566Right-handed alpha
Helix 12
HD3
A
576 587Right-handed 310
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There are 7 sheets in PDB entry 1OJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
148 152parallel
Strand 3
A
125 128parallel
Strand 4
A
267 270parallel
Strand 5
A
435 437parallel
Strand 6
A
428 430anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 237first strand
Strand 2
A
240 245anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
120 123parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
326 330parallel
Strand 3
A
303 307parallel
Strand 4
A
394 396parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 371first strand
Strand 2
A
374 380anti-parallel
Strand 3
A
389 391anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
484 488anti-parallel
Strand 3
A
537 541anti-parallel
Strand 4
A
523 529anti-parallel
Strand 5
A
501 507anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
400 402anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
253 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il