Analysis of interatomic Contacts of Structural Units in PDB entry:
1OLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OLJ entry

There are 5 chains in PDB entry 1OLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PRO 208
B
 ALA 1PRO 207
C
 ALA 1PRO 208
D
 ALA 1PRO 207
E
 ALA 1PRO 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1OLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
B
2 11Right-handed alpha
Helix 3
3
C
3 12Right-handed alpha
Helix 4
4
C
62 65Right-handed 310
Helix 5
5
D
3 13Right-handed alpha
Helix 6
6
D
64 67Right-handed 310
Helix 7
7
E
5 13Right-handed alpha
Helix 8
8
E
65 68Right-handed 310
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There are 13 sheets in PDB entry 1OLJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, DA, DB, EA, EB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
113 116anti-parallel
Strand 4
A
47 59anti-parallel
Strand 5
A
27 42anti-parallel
Strand 6
A
154 157parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
113 116anti-parallel
Strand 4
A
47 59anti-parallel
Strand 5
A
119 125anti-parallel
Strand 6
A
99 100anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
137 146anti-parallel
Strand 3
A
194 206anti-parallel
Strand 4
A
174 178anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
137 146anti-parallel
Strand 3
A
194 206anti-parallel
Strand 4
A
181 187anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
107 110anti-parallel
Strand 3
B
115 118anti-parallel
Strand 4
B
49 61anti-parallel
Strand 5
B
29 44anti-parallel
Strand 6
B
156 159parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
107 110anti-parallel
Strand 3
B
115 118anti-parallel
Strand 4
B
49 61anti-parallel
Strand 5
B
121 127anti-parallel
Strand 6
B
101 102anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
142 148anti-parallel
Strand 3
B
197 205anti-parallel
Strand 4
B
178 187anti-parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
C
108 110anti-parallel
Strand 3
C
114 117anti-parallel
Strand 4
C
48 60anti-parallel
Strand 5
C
100 101first strand
Strand 6
C
120 125anti-parallel
Strand 7
C
48 60anti-parallel
Strand 8
C
155 159first strand
Strand 9
C
28 43parallel
Strand 10
C
48 60anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 91first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
195 206anti-parallel
Strand 4
C
176 188anti-parallel
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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 79first strand
Strand 2
D
110 112anti-parallel
Strand 3
D
116 119anti-parallel
Strand 4
D
50 62anti-parallel
Strand 5
D
102 103first strand
Strand 6
D
122 128anti-parallel
Strand 7
D
50 62anti-parallel
Strand 8
D
157 160first strand
Strand 9
D
30 45parallel
Strand 10
D
50 62anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 93first strand
Strand 2
D
144 149anti-parallel
Strand 3
D
196 206anti-parallel
Strand 4
D
179 190anti-parallel
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There are 10 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
79 83first strand
Strand 2
E
109 113anti-parallel
Strand 3
E
117 119anti-parallel
Strand 4
E
51 63anti-parallel
Strand 5
E
103 104first strand
Strand 6
E
121 129anti-parallel
Strand 7
E
51 63anti-parallel
Strand 8
E
158 161first strand
Strand 9
E
31 46parallel
Strand 10
E
51 63anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
92 94first strand
Strand 2
E
141 150anti-parallel
Strand 3
E
199 206anti-parallel
Strand 4
E
183 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il