Analysis of interatomic Contacts of Structural Units in PDB entry:
1OM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OM0 entry

There is 1 chain in PDB entry 1OM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1OM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
20 27Right-handed alpha
Helix 3
3
A
55 57Right-handed 310
Helix 4
4
A
58 69Right-handed alpha
Helix 5
5
A
88 104Right-handed alpha
Helix 6
6
A
135 146Right-handed alpha
Helix 7
7
A
169 177Right-handed alpha
Helix 8
8
A
200 212Right-handed alpha
Helix 9
9
A
232 239Right-handed alpha
Helix 10
10
A
239 245Right-handed alpha
Helix 11
11
A
257 265Right-handed alpha
Helix 12
12
A
266 271Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1OM0.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
32 40anti-parallel
Strand 3
A
8 12parallel
Strand 4
A
250 256parallel
Strand 5
A
216 222parallel
Strand 6
A
183 187parallel
Strand 7
A
157 163parallel
Strand 8
A
122 127parallel
Strand 9
A
73 79parallel
Strand 10
A
32 40parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il