Analysis of interatomic Contacts of Structural Units in PDB entry:
1OM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OM9 entry

There are 4 chains in PDB entry 1OM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 498LEU 639
P
 ASP 3THR 13
B
 ALA 498LEU 639
Q
 ASP 4THR 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 1OM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
503 507Right-handed 310
Helix 2
2
B
503 507Right-handed 310
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There are 4 sheets in PDB entry 1OM9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 520first strand
Strand 2
A
523 531anti-parallel
Strand 3
A
540 549anti-parallel
Strand 4
A
591 599anti-parallel
Strand 5
A
569 572anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 563first strand
Strand 2
A
608 616anti-parallel
Strand 3
A
619 627anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
515 520first strand
Strand 2
B
523 531anti-parallel
Strand 3
B
540 549anti-parallel
Strand 4
B
591 599anti-parallel
Strand 5
B
569 575anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
555 563first strand
Strand 2
B
608 616anti-parallel
Strand 3
B
619 627anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il