Analysis of interatomic Contacts of Structural Units in PDB entry:
1OME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OME entry

There are 2 chains in PDB entry 1OME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 31PHE 290
B
 GLU 32PHE 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1OME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 40Right-handed alpha
Helix 2
2
A
70 81Right-handed 310
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
109 112Right-handed 310
Helix 5
5
A
119 129Right-handed alpha
Helix 6
6
A
132 142Right-handed alpha
Helix 7
7
A
145 154Right-handed alpha
Helix 8
8
A
183 193Right-handed alpha
Helix 9
9
A
201 212Right-handed alpha
Helix 10
10
A
221 224Right-handed alpha
Helix 11
11
A
276 288Right-handed 310
Helix 12
12
B
33 40Right-handed alpha
Helix 13
13
B
69 81Right-handed 310
Helix 14
14
B
89 92Right-handed 310
Helix 15
15
B
99 101Right-handed 310
Helix 16
16
B
109 111Right-handed 310
Helix 17
17
B
119 129Right-handed alpha
Helix 18
18
B
132 142Right-handed alpha
Helix 19
19
B
145 155Right-handed alpha
Helix 20
20
B
183 193Right-handed alpha
Helix 21
21
B
201 212Right-handed alpha
Helix 22
22
B
215 217Right-handed 310
Helix 23
23
B
221 224Right-handed alpha
Helix 24
24
B
276 287Right-handed alpha
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There are 6 sheets in PDB entry 1OME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
259 267anti-parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
230 236anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
180 182anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
115 118anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
43 50anti-parallel
Strand 3
B
259 266anti-parallel
Strand 4
B
245 251anti-parallel
Strand 5
B
230 235anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
180 182anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
115 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il