Analysis of interatomic Contacts of Structural Units in PDB entry:
1OMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OMI entry

There are 2 chains in PDB entry 1OMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1005ASN 1237
B
 GLY 2005ASN 2237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 1OMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1005 1014Right-handed alpha
Helix 2
2
A
1099 1108Right-handed alpha
Helix 3
3
A
1109 1154Right-handed alpha
Helix 4
4
A
1170 1174Right-handed 310
Helix 5
5
A
1184 1196Right-handed alpha
Helix 6
6
A
1210 1218Right-handed alpha
Helix 7
7
A
1218 1229Right-handed alpha
Helix 8
8
A
1229 1235Right-handed alpha
Helix 9
9
B
2005 2015Right-handed alpha
Helix 10
10
B
2099 2108Right-handed alpha
Helix 11
11
B
2109 2154Right-handed alpha
Helix 12
12
B
2167 2173Right-handed alpha
Helix 13
13
B
2184 2196Right-handed alpha
Helix 14
14
B
2210 2218Right-handed alpha
Helix 15
15
B
2218 2229Right-handed alpha
Helix 16
16
B
2229 2234Right-handed alpha
Helix 17
17
B
2235 2237Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1OMI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1020 1021first strand
Strand 2
A
1093 1098anti-parallel
Strand 3
A
1037 1043anti-parallel
Strand 4
A
1067 1070anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1027 1029first strand
Strand 2
A
1084 1087anti-parallel
Strand 3
A
1045 1051anti-parallel
Strand 4
A
1057 1064anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1155 1158first strand
Strand 2
A
1161 1164anti-parallel
Strand 3
A
1206 1208anti-parallel
Strand 4
A
1199 1201anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2020 2023first strand
Strand 2
B
2091 2098anti-parallel
Strand 3
B
2037 2043anti-parallel
Strand 4
B
2067 2070anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2027 2029first strand
Strand 2
B
2084 2087anti-parallel
Strand 3
B
2045 2051anti-parallel
Strand 4
B
2057 2064anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2155 2156first strand
Strand 2
B
2162 2164anti-parallel
Strand 3
B
2206 2208anti-parallel
Strand 4
B
2199 2201anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il