Analysis of interatomic Contacts of Structural Units in PDB entry:
1OMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OMW entry

There are 3 chains in PDB entry 1OMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29PRO 668
B
 SER 2ASN 340
G
 SER 8PHE 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1OMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 38Right-handed 310
Helix 2
2
A
39 50Right-handed alpha
Helix 3
3
A
54 60Right-handed alpha
Helix 4
4
A
61 76Right-handed alpha
Helix 5
5
A
79 94Right-handed alpha
Helix 6
6
A
97 113Right-handed alpha
Helix 7
7
A
113 119Right-handed alpha
Helix 8
8
A
125 137Right-handed alpha
Helix 9
9
A
146 158Right-handed alpha
Helix 10
10
A
159 167Right-handed alpha
Helix 11
11
A
168 183Right-handed alpha
Helix 12
12
A
224 231Right-handed alpha
Helix 13
13
A
232 247Right-handed alpha
Helix 14
14
A
278 287Right-handed alpha
Helix 15
15
A
290 311Right-handed alpha
Helix 16
16
A
319 321Right-handed 310
Helix 17
17
A
353 357Right-handed 310
Helix 18
18
A
358 363Right-handed alpha
Helix 19
19
A
370 387Right-handed alpha
Helix 20
20
A
398 406Right-handed alpha
Helix 21
21
A
418 429Right-handed alpha
Helix 22
22
A
443 449Right-handed alpha
Helix 23
23
A
450 454Right-handed 310
Helix 24
24
A
457 463Right-handed alpha
Helix 25
25
A
503 507Right-handed 310
Helix 26
26
A
513 524Right-handed alpha
Helix 27
27
A
525 548Right-handed alpha
Helix 28
28
A
636 659Right-handed alpha
Helix 29
29
B
4 24Right-handed alpha
Helix 30
30
B
29 34Right-handed alpha
Helix 31
31
G
8 24Right-handed alpha
Helix 32
32
G
29 44Right-handed alpha
Helix 33
33
G
55 59Right-handed 310
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There are 11 sheets in PDB entry 1OMW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 199first strand
Strand 2
A
204 210anti-parallel
Strand 3
A
216 223anti-parallel
Strand 4
A
266 271anti-parallel
Strand 5
A
257 262anti-parallel
Strand 6
A
511 512anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
340 341anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
331 333anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 602first strand
Strand 2
A
587 591anti-parallel
Strand 3
A
577 584anti-parallel
Strand 4
A
561 567anti-parallel
Strand 5
A
629 633anti-parallel
Strand 6
A
618 624anti-parallel
Strand 7
A
606 613anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
89 94anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
134 140anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 153first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
166 170anti-parallel
Strand 4
B
175 180anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
218 222anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
293 298anti-parallel
Strand 4
B
304 309anti-parallel
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