Analysis of interatomic Contacts of Structural Units in PDB entry:
1ONF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ONF entry

There is 1 chain in PDB entry 1ONF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLN 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 1ONF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
36 42Right-handed alpha
Helix 3
3
A
43 63Right-handed alpha
Helix 4
4
A
64 67Right-handed 310
Helix 5
5
A
75 101Right-handed alpha
Helix 6
6
A
159 163Right-handed 310
Helix 7
7
A
166 170Right-handed alpha
Helix 8
8
A
184 196Right-handed alpha
Helix 9
9
A
215 229Right-handed alpha
Helix 10
10
A
352 369Right-handed alpha
Helix 11
11
A
396 404Right-handed alpha
Helix 12
12
A
405 407Right-handed 310
Helix 13
13
A
418 422Right-handed 310
Helix 14
14
A
427 431Right-handed 310
Helix 15
15
A
456 470Right-handed alpha
Helix 16
16
A
473 479Right-handed alpha
Helix 17
17
A
489 494Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1ONF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
27 31parallel
Strand 3
A
4 7parallel
Strand 4
A
144 146parallel
Strand 5
A
306 308parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
265 268parallel
Strand 3
A
177 181parallel
Strand 4
A
200 204parallel
Strand 5
A
232 234parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
259 263anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
313 315parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
390 394anti-parallel
Strand 3
A
446 453anti-parallel
Strand 4
A
434 441anti-parallel
Strand 5
A
409 416anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il