Analysis of interatomic Contacts of Structural Units in PDB entry:
1OO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OO8 entry

There is 1 chain in PDB entry 1OO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24GLN 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1OO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 44Right-handed alpha
Helix 2
2
A
53 65Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
69 80Right-handed alpha
Helix 5
5
A
88 104Right-handed alpha
Helix 6
6
A
127 137Right-handed alpha
Helix 7
7
A
149 163Right-handed alpha
Helix 8
8
A
199 203Right-handed 310
Helix 9
9
A
259 267Right-handed alpha
Helix 10
10
A
268 278Right-handed alpha
Helix 11
11
A
299 305Right-handed alpha
Helix 12
12
A
309 313Right-handed 310
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There are 3 sheets in PDB entry 1OO8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
382 388anti-parallel
Strand 3
A
370 376anti-parallel
Strand 4
A
248 255anti-parallel
Strand 5
A
237 244anti-parallel
Strand 6
A
214 232anti-parallel
Strand 7
A
204 211anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
382 388anti-parallel
Strand 3
A
370 376anti-parallel
Strand 4
A
248 255anti-parallel
Strand 5
A
237 244anti-parallel
Strand 6
A
214 232anti-parallel
Strand 7
A
282 289anti-parallel
Strand 8
A
363 365parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
113 121parallel
Strand 3
A
182 191anti-parallel
Strand 4
A
331 340parallel
Strand 5
A
291 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il