Analysis of interatomic Contacts of Structural Units in PDB entry:
1OO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OO9 entry

There are 2 chains in PDB entry 1OO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 83PRO 250
B
 CYS 301GLU 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1OO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 126Right-handed alpha
Helix 2
2
A
195 207Right-handed alpha
Helix 3
3
A
228 232Right-handed 310
Helix 4
4
A
235 247Right-handed alpha
Helix 5
5
B
307 315Right-handed alpha
Helix 6
6
B
366 370Right-handed 310
Helix 7
7
B
406 408Right-handed 310
Helix 8
8
B
409 418Right-handed alpha
Helix 9
9
B
419 425Right-handed alpha
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There are 3 sheets in PDB entry 1OO9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
96 101parallel
Strand 3
A
142 147parallel
Strand 4
A
178 181parallel
Strand 5
A
163 167anti-parallel
Strand 6
B
302 303anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
193 194parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 404first strand
Strand 2
B
383 390anti-parallel
Strand 3
B
393 395anti-parallel
Strand 4
B
360 364parallel
Strand 5
B
335 347anti-parallel
Strand 6
B
328 329anti-parallel
Strand 7
B
335 347anti-parallel
Strand 8
B
317 323anti-parallel
Strand 9
B
383 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il