Analysis of interatomic Contacts of Structural Units in PDB entry:
1OOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OOE entry

There are 2 chains in PDB entry 1OOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 236
B
 SER 2GLN 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1OOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
52 69Right-handed alpha
Helix 3
3
A
92 118Right-handed alpha
Helix 4
4
A
130 135Right-handed 310
Helix 5
5
A
140 159Right-handed alpha
Helix 6
6
A
180 187Right-handed alpha
Helix 7
7
A
191 195Right-handed 310
Helix 8
8
A
197 211Right-handed alpha
Helix 9
9
A
212 215Right-handed 310
Helix 10
10
B
13 26Right-handed alpha
Helix 11
11
B
52 69Right-handed alpha
Helix 12
12
B
92 118Right-handed alpha
Helix 13
13
B
130 135Right-handed 310
Helix 14
14
B
140 159Right-handed alpha
Helix 15
15
B
180 187Right-handed alpha
Helix 16
16
B
191 195Right-handed 310
Helix 17
17
B
197 211Right-handed alpha
Helix 18
18
B
212 215Right-handed 310
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There are 2 sheets in PDB entry 1OOE. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
28 34parallel
Strand 3
A
4 9parallel
Strand 4
A
73 78parallel
Strand 5
A
119 128parallel
Strand 6
A
169 175parallel
Strand 7
A
221 227parallel
Strand 8
A
230 235anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
28 34parallel
Strand 3
B
4 9parallel
Strand 4
B
73 78parallel
Strand 5
B
119 128parallel
Strand 6
B
169 175parallel
Strand 7
B
221 227parallel
Strand 8
B
230 235anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il