Analysis of interatomic Contacts of Structural Units in PDB entry:
1OOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OOK entry

There are 6 chains in PDB entry 1OOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ARG 15
B
 ILE 16GLU 247
P
 PHE 1ARG 3
G
 HIS 1LEU 275
G
 ASP 277TYR 278
G
 PRO 280THR 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1OOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
14 14Right-handed alpha
Helix 3
3
B
55 58Right-handed 310
Helix 4
4
B
60 60Right-handed 310
Helix 5
5
B
60 62Right-handed 310
Helix 6
6
B
125 130Right-handed alpha
Helix 7
7
B
164 170Right-handed alpha
Helix 8
8
B
234 243Right-handed alpha
Helix 9
9
G
49 52Right-handed 310
Helix 10
10
G
213 223Right-handed alpha
Helix 11
11
G
224 227Right-handed 310
Helix 12
12
G
242 246Right-handed 310
Helix 13
13
G
247 251Right-handed 310
Helix 14
14
G
255 259Right-handed 310
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There are 5 sheets in PDB entry 1OOK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 163anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
198 202anti-parallel
Strand 5
B
207 215anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
180 183anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 35first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
81 90anti-parallel
Strand 6
B
64 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 60first strand
Strand 2
B
60 60anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
5 9first strand
Strand 2
G
12 16anti-parallel
Strand 3
G
33 37parallel
Strand 4
G
59 61parallel
Strand 5
G
81 83parallel
Strand 6
G
104 106parallel
Strand 7
G
128 130parallel
Strand 8
G
152 154parallel
Strand 9
G
176 178parallel
Strand 10
G
199 201parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
45 47first strand
Strand 2
G
69 71parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il