Analysis of interatomic Contacts of Structural Units in PDB entry:
1OPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OPE entry

There are 2 chains in PDB entry 1OPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1THR 481
B
 THR 1THR 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1OPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 12Right-handed alpha
Helix 2
2
A
31 42Right-handed alpha
Helix 3
3
A
59 66Right-handed alpha
Helix 4
4
A
80 89Right-handed alpha
Helix 5
5
A
98 111Right-handed alpha
Helix 6
6
A
124 129Right-handed alpha
Helix 7
7
A
185 189Right-handed 310
Helix 8
8
A
191 196Right-handed alpha
Helix 9
9
A
216 220Right-handed 310
Helix 10
10
A
223 227Right-handed 310
Helix 11
11
A
262 271Right-handed alpha
Helix 12
12
A
272 274Right-handed 310
Helix 13
13
A
285 292Right-handed alpha
Helix 14
14
A
316 320Right-handed 310
Helix 15
15
A
342 352Right-handed alpha
Helix 16
16
A
386 391Right-handed alpha
Helix 17
17
A
455 463Right-handed alpha
Helix 18
18
B
6 12Right-handed alpha
Helix 19
19
B
31 42Right-handed alpha
Helix 20
20
B
59 66Right-handed alpha
Helix 21
21
B
80 89Right-handed alpha
Helix 22
22
B
98 112Right-handed alpha
Helix 23
23
B
124 129Right-handed alpha
Helix 24
24
B
185 189Right-handed 310
Helix 25
25
B
191 196Right-handed alpha
Helix 26
26
B
216 220Right-handed 310
Helix 27
27
B
223 227Right-handed 310
Helix 28
28
B
262 271Right-handed alpha
Helix 29
29
B
272 274Right-handed 310
Helix 30
30
B
285 291Right-handed alpha
Helix 31
31
B
292 294Right-handed 310
Helix 32
32
B
316 320Right-handed 310
Helix 33
33
B
342 352Right-handed alpha
Helix 34
34
B
386 391Right-handed alpha
Helix 35
35
B
455 463Right-handed alpha
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There are 12 sheets in PDB entry 1OPE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
229 232parallel
Strand 3
A
199 210parallel
Strand 4
A
166 177parallel
Strand 5
A
19 22parallel
Strand 6
A
46 50parallel
Strand 7
A
69 74parallel
Strand 8
A
93 96parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
229 232parallel
Strand 3
A
199 210parallel
Strand 4
A
166 177parallel
Strand 5
A
182 183anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
150 153anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
143 144anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 340first strand
Strand 2
A
308 311anti-parallel
Strand 3
A
300 304anti-parallel
Strand 4
A
278 282parallel
Strand 5
A
357 361parallel
Strand 6
A
397 401parallel
Strand 7
A
429 431parallel
Strand 8
A
435 440anti-parallel
Strand 9
A
444 450anti-parallel
Strand 10
A
468 475parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
364 366anti-parallel
Strand 3
A
413 414parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
229 232parallel
Strand 3
B
199 210parallel
Strand 4
B
166 177parallel
Strand 5
B
19 22parallel
Strand 6
B
46 49parallel
Strand 7
B
69 74parallel
Strand 8
B
93 96parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
229 232parallel
Strand 3
B
199 210parallel
Strand 4
B
166 177parallel
Strand 5
B
182 183anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
156 162anti-parallel
Strand 3
B
150 153anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 135first strand
Strand 2
B
141 144anti-parallel
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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 340first strand
Strand 2
B
308 311anti-parallel
Strand 3
B
300 304anti-parallel
Strand 4
B
278 282parallel
Strand 5
B
357 361parallel
Strand 6
B
397 401parallel
Strand 7
B
429 431parallel
Strand 8
B
435 440anti-parallel
Strand 9
B
444 450anti-parallel
Strand 10
B
468 475parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 372first strand
Strand 2
B
364 366anti-parallel
Strand 3
B
413 414parallel
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