Analysis of interatomic Contacts of Structural Units in PDB entry:
1OQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OQB entry

There are 6 chains in PDB entry 1OQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 18LEU 363
B
 PHE 18LEU 363
C
 PHE 18LEU 363
D
 PHE 18LEU 363
E
 PHE 18LEU 363
F
 PHE 18LEU 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are108 helices in PDB entry 1OQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 35Right-handed 310
Helix 2
2
A
36 43Right-handed alpha
Helix 3
3
A
43 51Right-handed alpha
Helix 4
4
A
57 61Right-handed 310
Helix 5
5
A
63 68Right-handed 310
Helix 6
6
A
75 89Right-handed alpha
Helix 7
7
A
91 107Right-handed alpha
Helix 8
8
A
107 116Right-handed alpha
Helix 9
9
A
130 158Right-handed alpha
Helix 10
10
A
161 176Right-handed alpha
Helix 11
11
A
184 213Right-handed alpha
Helix 12
12
A
215 247Right-handed alpha
Helix 13
13
A
247 262Right-handed alpha
Helix 14
14
A
277 289Right-handed alpha
Helix 15
15
A
293 308Right-handed alpha
Helix 16
16
A
309 313Right-handed 310
Helix 17
17
A
317 338Right-handed alpha
Helix 18
18
A
354 357Right-handed 310
Helix 19
19
B
33 35Right-handed 310
Helix 20
20
B
36 43Right-handed alpha
Helix 21
21
B
43 51Right-handed alpha
Helix 22
22
B
57 61Right-handed 310
Helix 23
23
B
63 68Right-handed 310
Helix 24
24
B
75 89Right-handed alpha
Helix 25
25
B
91 107Right-handed alpha
Helix 26
26
B
107 116Right-handed alpha
Helix 27
27
B
130 158Right-handed alpha
Helix 28
28
B
161 176Right-handed alpha
Helix 29
29
B
184 213Right-handed alpha
Helix 30
30
B
215 247Right-handed alpha
Helix 31
31
B
247 262Right-handed alpha
Helix 32
32
B
277 289Right-handed alpha
Helix 33
33
B
293 308Right-handed alpha
Helix 34
34
B
309 313Right-handed 310
Helix 35
35
B
317 338Right-handed alpha
Helix 36
36
B
354 357Right-handed 310
Helix 37
37
C
33 35Right-handed 310
Helix 38
38
C
36 43Right-handed alpha
Helix 39
39
C
43 51Right-handed alpha
Helix 40
40
C
57 61Right-handed 310
Helix 41
41
C
63 68Right-handed 310
Helix 42
42
C
75 89Right-handed alpha
Helix 43
43
C
91 107Right-handed alpha
Helix 44
44
C
107 116Right-handed alpha
Helix 45
45
C
130 158Right-handed alpha
Helix 46
46
C
161 176Right-handed alpha
Helix 47
47
C
184 213Right-handed alpha
Helix 48
48
C
215 247Right-handed alpha
Helix 49
49
C
247 262Right-handed alpha
Helix 50
50
C
277 289Right-handed alpha
Helix 51
51
C
293 308Right-handed alpha
Helix 52
52
C
309 313Right-handed 310
Helix 53
53
C
317 338Right-handed alpha
Helix 54
54
C
354 357Right-handed 310
Helix 55
55
D
33 35Right-handed 310
Helix 56
56
D
36 43Right-handed alpha
Helix 57
57
D
43 51Right-handed alpha
Helix 58
58
D
57 61Right-handed 310
Helix 59
59
D
63 68Right-handed 310
Helix 60
60
D
75 88Right-handed alpha
Helix 61
61
D
91 107Right-handed alpha
Helix 62
62
D
107 116Right-handed alpha
Helix 63
63
D
130 158Right-handed alpha
Helix 64
64
D
161 176Right-handed alpha
Helix 65
65
D
184 213Right-handed alpha
Helix 66
66
D
215 247Right-handed alpha
Helix 67
67
D
247 262Right-handed alpha
Helix 68
68
D
277 289Right-handed alpha
Helix 69
69
D
293 308Right-handed alpha
Helix 70
70
D
309 313Right-handed 310
Helix 71
71
D
317 338Right-handed alpha
Helix 72
72
D
354 357Right-handed 310
Helix 73
73
E
33 35Right-handed 310
Helix 74
74
E
36 43Right-handed alpha
Helix 75
75
E
43 51Right-handed alpha
Helix 76
76
E
57 61Right-handed 310
Helix 77
77
E
63 68Right-handed 310
Helix 78
78
E
75 89Right-handed alpha
Helix 79
79
E
91 107Right-handed alpha
Helix 80
80
E
107 116Right-handed alpha
Helix 81
81
E
130 158Right-handed alpha
Helix 82
82
E
161 176Right-handed alpha
Helix 83
83
E
184 213Right-handed alpha
Helix 84
84
E
215 247Right-handed alpha
Helix 85
85
E
247 262Right-handed alpha
Helix 86
86
E
277 289Right-handed alpha
Helix 87
87
E
293 308Right-handed alpha
Helix 88
88
E
309 313Right-handed 310
Helix 89
89
E
317 338Right-handed alpha
Helix 90
90
E
354 357Right-handed 310
Helix 91
91
F
33 35Right-handed 310
Helix 92
92
F
36 43Right-handed alpha
Helix 93
93
F
43 51Right-handed alpha
Helix 94
94
F
57 61Right-handed 310
Helix 95
95
F
63 68Right-handed 310
Helix 96
96
F
75 89Right-handed alpha
Helix 97
97
F
91 107Right-handed alpha
Helix 98
98
F
107 116Right-handed alpha
Helix 99
99
F
130 158Right-handed alpha
Helix 100
100
F
161 176Right-handed alpha
Helix 101
101
F
184 213Right-handed alpha
Helix 102
102
F
215 247Right-handed alpha
Helix 103
103
F
247 262Right-handed alpha
Helix 104
104
F
277 289Right-handed alpha
Helix 105
105
F
293 308Right-handed alpha
Helix 106
106
F
309 313Right-handed 310
Helix 107
107
F
317 338Right-handed alpha
Helix 108
108
F
354 357Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1OQB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
360 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
360 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
350 352first strand
Strand 2
C
360 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
350 352first strand
Strand 2
D
360 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
350 352first strand
Strand 2
E
360 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
350 352first strand
Strand 2
F
360 362anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il