Analysis of interatomic Contacts of Structural Units in PDB entry:
1OQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OQJ entry

There are 2 chains in PDB entry 1OQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 90ARG 179
B
 ASP 90CYS 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1OQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 111Right-handed 310
Helix 2
2
A
129 137Right-handed alpha
Helix 3
3
A
139 143Right-handed 310
Helix 4
4
A
144 149Right-handed alpha
Helix 5
5
A
156 162Right-handed alpha
Helix 6
6
B
109 111Right-handed 310
Helix 7
7
B
129 139Right-handed alpha
Helix 8
8
B
144 149Right-handed alpha
Helix 9
9
B
156 162Right-handed alpha
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There are 3 sheets in PDB entry 1OQJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
121 123anti-parallel
Strand 3
A
102 107anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
B
93 99parallel
Strand 6
B
102 107anti-parallel
Strand 7
B
121 123anti-parallel
Strand 8
B
126 128anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
121 123anti-parallel
Strand 3
A
102 107anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
B
93 99parallel
Strand 6
B
150 151anti-parallel
Strand 7
B
154 155anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
154 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il