Analysis of interatomic Contacts of Structural Units in PDB entry:
1OQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OQL entry

There are 2 chains in PDB entry 1OQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1GLY 248
B
 ASP 1PRO 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1OQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
95 100Right-handed alpha
Helix 3
3
A
114 123Right-handed alpha
Helix 4
4
A
124 128Right-handed 310
Helix 5
5
A
131 144Right-handed alpha
Helix 6
6
A
148 163Right-handed alpha
Helix 7
7
A
163 169Right-handed alpha
Helix 8
8
A
169 183Right-handed alpha
Helix 9
9
A
189 209Right-handed alpha
Helix 10
10
A
234 236Right-handed 310
Helix 11
11
B
16 20Right-handed 310
Helix 12
12
B
26 28Right-handed 310
Helix 13
13
B
45 49Right-handed 310
Helix 14
14
B
85 90Right-handed 310
Helix 15
15
B
127 131Right-handed 310
Helix 16
16
B
147 151Right-handed 310
Helix 17
17
B
169 172Right-handed 310
Helix 18
18
B
212 215Right-handed 310
Helix 19
19
B
238 244Right-handed 310
Helix 20
20
B
254 258Right-handed 310
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There are 12 sheets in PDB entry 1OQL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
53 60parallel
Strand 3
A
65 71anti-parallel
Strand 4
A
77 82anti-parallel
Strand 5
A
85 90anti-parallel
Strand 6
A
108 112parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
37 40anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 222first strand
Strand 2
A
226 232anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
50 52anti-parallel
Strand 3
B
58 60anti-parallel
Strand 4
B
63 67anti-parallel
Strand 5
B
76 79anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
133 134anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
35 38anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
99 101anti-parallel
Strand 3
B
106 109anti-parallel
Strand 4
B
120 122anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
174 176anti-parallel
Strand 3
B
141 146anti-parallel
Strand 4
B
260 262anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
159 163anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
204 207anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
225 227anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
246 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il