Analysis of interatomic Contacts of Structural Units in PDB entry:
1OQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OQS entry

There are 8 chains in PDB entry 1OQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1CYS 133
B
 ASN 1CYS 133
C
 ASN 1CYS 133
D
 ASN 1CYS 133
E
 ASN 1CYS 133
F
 ASN 1CYS 133
G
 ASN 1CYS 133
H
 ASN 1CYS 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 1OQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 14Right-handed alpha
Helix 2
2
A
17 25Right-handed 310
Helix 3
3
A
39 54Right-handed alpha
Helix 4
4
A
89 110Right-handed alpha
Helix 5
5
A
111 113Right-handed 310
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
B
1 14Right-handed alpha
Helix 8
8
B
17 22Right-handed 310
Helix 9
9
B
39 54Right-handed alpha
Helix 10
10
B
90 109Right-handed alpha
Helix 11
11
B
114 118Right-handed 310
Helix 12
12
B
121 127Right-handed 310
Helix 13
13
C
1 14Right-handed alpha
Helix 14
14
C
17 25Right-handed 310
Helix 15
15
C
39 53Right-handed alpha
Helix 16
16
C
89 110Right-handed alpha
Helix 17
17
C
111 113Right-handed 310
Helix 18
18
C
114 118Right-handed 310
Helix 19
19
C
119 124Right-handed 310
Helix 20
20
D
1 14Right-handed alpha
Helix 21
21
D
17 22Right-handed 310
Helix 22
22
D
39 55Right-handed alpha
Helix 23
23
D
89 110Right-handed alpha
Helix 24
24
D
111 113Right-handed 310
Helix 25
25
D
114 118Right-handed 310
Helix 26
26
D
121 127Right-handed 310
Helix 27
27
E
1 14Right-handed alpha
Helix 28
28
E
17 25Right-handed 310
Helix 29
29
E
39 53Right-handed alpha
Helix 30
30
E
89 109Right-handed alpha
Helix 31
31
E
110 113Right-handed 310
Helix 32
32
E
114 118Right-handed 310
Helix 33
33
E
120 125Right-handed 310
Helix 34
34
F
1 14Right-handed alpha
Helix 35
35
F
18 22Right-handed 310
Helix 36
36
F
39 54Right-handed alpha
Helix 37
37
F
90 109Right-handed alpha
Helix 38
38
F
110 113Right-handed 310
Helix 39
39
F
114 118Right-handed 310
Helix 40
40
F
121 127Right-handed 310
Helix 41
41
G
1 14Right-handed alpha
Helix 42
42
G
17 25Right-handed 310
Helix 43
43
G
39 54Right-handed alpha
Helix 44
44
G
89 108Right-handed alpha
Helix 45
45
G
109 113Right-handed 310
Helix 46
46
G
114 118Right-handed 310
Helix 47
47
G
120 125Right-handed 310
Helix 48
48
H
1 14Right-handed alpha
Helix 49
49
H
17 22Right-handed 310
Helix 50
50
H
39 54Right-handed alpha
Helix 51
51
H
90 109Right-handed alpha
Helix 52
52
H
110 113Right-handed 310
Helix 53
53
H
114 118Right-handed 310
Helix 54
54
H
121 127Right-handed 310
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There are 12 sheets in PDB entry 1OQS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
81 84anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
29 30anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
81 84anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 78first strand
Strand 2
C
81 84anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 25first strand
Strand 2
D
29 30anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 78first strand
Strand 2
D
81 84anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
75 78first strand
Strand 2
E
81 84anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
24 25first strand
Strand 2
F
29 30anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
75 78first strand
Strand 2
F
81 84anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
75 78first strand
Strand 2
G
81 84anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
24 25first strand
Strand 2
H
29 30anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
75 78first strand
Strand 2
H
81 84anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il