Analysis of interatomic Contacts of Structural Units in PDB entry:
1OQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OQV entry

There are 3 chains in PDB entry 1OQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 29SER 199
B
 ASP 229SER 399
C
 ASP 429SER 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1OQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 52Right-handed alpha
Helix 2
2
A
53 55Right-handed 310
Helix 3
3
A
62 76Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
116 128Right-handed alpha
Helix 6
6
A
129 131Right-handed 310
Helix 7
7
A
143 148Right-handed alpha
Helix 8
8
A
156 160Right-handed 310
Helix 9
9
A
178 185Right-handed alpha
Helix 10
10
B
230 252Right-handed alpha
Helix 11
11
B
253 255Right-handed 310
Helix 12
12
B
262 276Right-handed alpha
Helix 13
13
B
280 285Right-handed alpha
Helix 14
14
B
316 328Right-handed alpha
Helix 15
15
B
329 331Right-handed 310
Helix 16
16
B
343 348Right-handed alpha
Helix 17
17
B
356 360Right-handed 310
Helix 18
18
B
378 385Right-handed alpha
Helix 19
19
C
430 452Right-handed alpha
Helix 20
20
C
453 455Right-handed 310
Helix 21
21
C
462 476Right-handed alpha
Helix 22
22
C
480 485Right-handed alpha
Helix 23
23
C
516 528Right-handed alpha
Helix 24
24
C
529 531Right-handed 310
Helix 25
25
C
543 548Right-handed 310
Helix 26
26
C
556 560Right-handed 310
Helix 27
27
C
578 585Right-handed alpha
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There are 3 sheets in PDB entry 1OQV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 100first strand
Strand 2
A
103 115anti-parallel
Strand 3
A
192 198anti-parallel
Strand 4
A
133 138anti-parallel
Strand 5
A
162 165anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 300first strand
Strand 2
B
303 315anti-parallel
Strand 3
B
392 398anti-parallel
Strand 4
B
333 338anti-parallel
Strand 5
B
362 365anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
494 500first strand
Strand 2
C
503 515anti-parallel
Strand 3
C
592 598anti-parallel
Strand 4
C
533 538anti-parallel
Strand 5
C
562 565anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il