Analysis of interatomic Contacts of Structural Units in PDB entry:
1OUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OUP entry

There are 7 chains in PDB entry 1OUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 C 8
D
 G 9 C 16
E
 G 1 C 6
G
 G 7 C 8
F
 G 9 C 16
A
 ALA 19GLN 231
B
 ALA 19CYS 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1OUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 35Right-handed alpha
Helix 2
2
A
69 74Right-handed alpha
Helix 3
3
A
83 89Right-handed alpha
Helix 4
4
A
91 105Right-handed alpha
Helix 5
5
A
106 113Right-handed alpha
Helix 6
6
A
114 117Right-handed 310
Helix 7
7
A
124 131Right-handed alpha
Helix 8
8
A
163 182Right-handed alpha
Helix 9
9
A
186 200Right-handed alpha
Helix 10
10
A
203 218Right-handed alpha
Helix 11
11
A
221 229Right-handed alpha
Helix 12
12
B
23 35Right-handed alpha
Helix 13
13
B
69 74Right-handed alpha
Helix 14
14
B
83 89Right-handed alpha
Helix 15
15
B
91 106Right-handed alpha
Helix 16
16
B
106 115Right-handed alpha
Helix 17
17
B
124 131Right-handed alpha
Helix 18
18
B
163 182Right-handed alpha
Helix 19
19
B
186 200Right-handed alpha
Helix 20
20
B
203 218Right-handed alpha
Helix 21
21
B
221 226Right-handed alpha
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There are 6 sheets in PDB entry 1OUP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
54 57anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
119 123anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
159 161parallel
Strand 3
A
149 154anti-parallel
Strand 4
A
144 146anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
56 57anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
119 123anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
159 161parallel
Strand 3
B
149 154anti-parallel
Strand 4
B
144 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il