Analysis of interatomic Contacts of Structural Units in PDB entry:
1OVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1OVW entry

There are 4 chains in PDB entry 1OVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	SER 398
B	THR 2	SER 398
C	THR 2	SER 398
D	THR 2	SER 398

There are 48 helices in PDB entry 1OVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	38	Right-handed alpha
Helix 2	2	A	63	69	Right-handed alpha
Helix 3	3	A	77	83	Right-handed alpha
Helix 4	4	A	155	157	Right-handed 310
Helix 5	5	A	165	167	Right-handed 310
Helix 6	6	A	225	228	Right-handed 310
Helix 7	7	A	312	317	Right-handed alpha
Helix 8	8	A	321	325	Right-handed alpha
Helix 9	9	A	328	338	Right-handed alpha
Helix 10	10	A	355	358	Right-handed alpha
Helix 11	11	A	372	378	Right-handed alpha
Helix 12	12	B	35	38	Right-handed alpha
Helix 13	13	B	63	69	Right-handed alpha
Helix 14	14	B	77	83	Right-handed alpha
Helix 15	15	B	155	157	Right-handed 310
Helix 16	16	B	165	167	Right-handed 310
Helix 17	17	B	225	228	Right-handed 310
Helix 18	18	B	243	246	Right-handed 310
Helix 19	19	B	312	318	Right-handed alpha
Helix 20	20	B	321	325	Right-handed alpha
Helix 21	21	B	328	338	Right-handed alpha
Helix 22	22	B	355	358	Right-handed alpha
Helix 23	23	B	360	362	Right-handed 310
Helix 24	24	B	372	378	Right-handed alpha
Helix 25	25	C	35	38	Right-handed alpha
Helix 26	26	C	63	69	Right-handed alpha
Helix 27	27	C	77	83	Right-handed alpha
Helix 28	28	C	155	157	Right-handed 310
Helix 29	29	C	165	167	Right-handed 310
Helix 30	30	C	225	228	Right-handed 310
Helix 31	31	C	312	317	Right-handed alpha
Helix 32	32	C	321	325	Right-handed alpha
Helix 33	33	C	328	338	Right-handed alpha
Helix 34	34	C	355	358	Right-handed alpha
Helix 35	35	C	360	362	Right-handed 310
Helix 36	36	C	372	378	Right-handed alpha
Helix 37	37	D	35	38	Right-handed alpha
Helix 38	38	D	63	69	Right-handed alpha
Helix 39	39	D	77	83	Right-handed alpha
Helix 40	40	D	155	157	Right-handed 310
Helix 41	41	D	165	167	Right-handed 310
Helix 42	42	D	225	228	Right-handed 310
Helix 43	43	D	312	317	Right-handed alpha
Helix 44	44	D	321	325	Right-handed alpha
Helix 45	45	D	328	338	Right-handed alpha
Helix 46	46	D	355	358	Right-handed alpha
Helix 47	47	D	360	362	Right-handed 310
Helix 48	48	D	372	378	Right-handed alpha

There are 16 sheets in PDB entry 1OVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	280	288	anti-parallel
Strand 3	A	266	274	anti-parallel
Strand 4	A	126	131	anti-parallel
Strand 5	A	390	392	anti-parallel
Strand 6	A	12	19	parallel
Strand 7	A	23	33	anti-parallel
Strand 8	A	106	110	anti-parallel
Strand 9	A	341	347	anti-parallel
Strand 10	A	141	147	anti-parallel
Strand 11	A	201	204	anti-parallel
Strand 12	A	207	209	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	91	95	anti-parallel
Strand 3	A	383	387	anti-parallel
Strand 4	A	130	132	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	221	223	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	210	213	anti-parallel
Strand 3	A	239	241	anti-parallel

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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	295	first strand
Strand 2	B	280	289	anti-parallel
Strand 3	B	266	274	anti-parallel
Strand 4	B	126	131	anti-parallel
Strand 5	B	390	392	anti-parallel
Strand 6	B	12	19	parallel
Strand 7	B	23	33	anti-parallel
Strand 8	B	106	110	anti-parallel
Strand 9	B	341	348	anti-parallel
Strand 10	B	140	147	anti-parallel
Strand 11	B	201	204	anti-parallel
Strand 12	B	207	209	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	383	387	anti-parallel
Strand 4	B	130	132	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	221	223	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	210	213	anti-parallel
Strand 3	B	239	241	anti-parallel

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There are 13 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	295	first strand
Strand 2	C	280	289	anti-parallel
Strand 3	C	266	274	anti-parallel
Strand 4	C	126	131	anti-parallel
Strand 5	C	390	392	anti-parallel
Strand 6	C	12	19	parallel
Strand 7	C	23	33	anti-parallel
Strand 8	C	106	110	anti-parallel
Strand 9	C	341	347	anti-parallel
Strand 10	C	141	147	anti-parallel
Strand 11	C	197	203	anti-parallel
Strand 12	C	210	213	anti-parallel
Strand 13	C	239	241	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	91	95	anti-parallel
Strand 3	C	383	387	anti-parallel
Strand 4	C	130	132	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	221	223	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	207	209	anti-parallel

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There are 13 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	295	first strand
Strand 2	D	280	289	anti-parallel
Strand 3	D	266	274	anti-parallel
Strand 4	D	126	131	anti-parallel
Strand 5	D	390	392	anti-parallel
Strand 6	D	12	19	parallel
Strand 7	D	23	33	anti-parallel
Strand 8	D	106	110	anti-parallel
Strand 9	D	341	347	anti-parallel
Strand 10	D	141	147	anti-parallel
Strand 11	D	197	203	anti-parallel
Strand 12	D	210	213	anti-parallel
Strand 13	D	239	241	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	88	first strand
Strand 2	D	91	95	anti-parallel
Strand 3	D	383	387	anti-parallel
Strand 4	D	130	132	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	221	223	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1OVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
1OVW