Analysis of interatomic Contacts of Structural Units in PDB entry:
1OX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OX9 entry

There are 16 chains in PDB entry 1OX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ASP 111
I
 ALA 1ALA 8
B
 SER 4ASP 111
J
 ALA 1ALA 8
C
 SER 4ASP 111
K
 ALA 1ALA 8
D
 SER 4ASP 111
L
 ALA 1ALA 8
E
 SER 4ASP 111
M
 ALA 1ALA 8
F
 SER 4ASP 111
N
 ALA 1ALA 8
G
 SER 4ASP 111
O
 ALA 1ALA 8
H
 SER 4ASP 111
P
 ALA 1ALA 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1OX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 24Right-handed alpha
Helix 2
2
A
56 60Right-handed 310
Helix 3
3
A
107 111Right-handed 310
Helix 4
4
B
9 22Right-handed alpha
Helix 5
5
B
42 46Right-handed 310
Helix 6
6
B
56 60Right-handed 310
Helix 7
7
B
107 111Right-handed 310
Helix 8
8
C
9 24Right-handed alpha
Helix 9
9
C
42 46Right-handed 310
Helix 10
10
C
56 60Right-handed 310
Helix 11
11
C
107 111Right-handed 310
Helix 12
12
D
9 24Right-handed alpha
Helix 13
13
D
42 46Right-handed 310
Helix 14
14
D
107 111Right-handed 310
Helix 15
15
E
9 23Right-handed alpha
Helix 16
16
E
42 46Right-handed 310
Helix 17
17
E
56 60Right-handed 310
Helix 18
18
F
9 24Right-handed alpha
Helix 19
19
F
42 46Right-handed 310
Helix 20
20
F
107 111Right-handed 310
Helix 21
21
G
9 24Right-handed alpha
Helix 22
22
G
42 46Right-handed 310
Helix 23
23
G
56 60Right-handed 310
Helix 24
24
H
9 24Right-handed alpha
Helix 25
25
H
42 46Right-handed 310
Helix 26
26
H
107 111Right-handed 310
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There are 16 sheets in PDB entry 1OX9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
101 103anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
79 86anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
28 33anti-parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
101 103anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
69 76anti-parallel
Strand 3
B
79 86anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
28 33anti-parallel
Strand 3
C
90 95anti-parallel
Strand 4
C
101 103anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 65first strand
Strand 2
C
69 76anti-parallel
Strand 3
C
79 86anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 54first strand
Strand 2
D
28 33anti-parallel
Strand 3
D
90 95anti-parallel
Strand 4
D
101 102anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 65first strand
Strand 2
D
69 76anti-parallel
Strand 3
D
79 86anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
50 54first strand
Strand 2
E
28 33anti-parallel
Strand 3
E
90 95anti-parallel
Strand 4
E
101 103anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 65first strand
Strand 2
E
69 73anti-parallel
Strand 3
E
82 86anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
50 54first strand
Strand 2
F
28 33anti-parallel
Strand 3
F
90 95anti-parallel
Strand 4
F
101 103anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
61 65first strand
Strand 2
F
69 76anti-parallel
Strand 3
F
79 86anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
50 54first strand
Strand 2
G
28 33anti-parallel
Strand 3
G
90 95anti-parallel
Strand 4
G
101 102anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
61 65first strand
Strand 2
G
69 76anti-parallel
Strand 3
G
79 86anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
51 54first strand
Strand 2
H
28 32anti-parallel
Strand 3
H
90 95anti-parallel
Strand 4
H
101 103anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 65first strand
Strand 2
H
69 76anti-parallel
Strand 3
H
79 86anti-parallel
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