Analysis of interatomic Contacts of Structural Units in PDB entry:
1OXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OXA entry

There is 1 chain in PDB entry 1OXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1OXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
16 26Right-handed alpha
Helix 3
3
A
45 53Right-handed alpha
Helix 4
4
A
73 75Right-handed 310
Helix 5
5
A
80 86Right-handed alpha
Helix 6
6
A
90 92Right-handed 310
Helix 7
7
A
97 106Right-handed alpha
Helix 8
8
A
111 132Right-handed alpha
Helix 9
9
A
140 143Right-handed alpha
Helix 10
10
A
145 157Right-handed alpha
Helix 11
11
A
166 175Right-handed alpha
Helix 12
12
A
179 205Right-handed 310
Helix 13
13
A
211 217Right-handed alpha
Helix 14
14
A
228 259Right-handed alpha
Helix 15
15
A
261 269Right-handed alpha
Helix 16
16
A
271 284Right-handed 310
Helix 17
17
A
316 321Right-handed alpha
Helix 18
18
A
354 371Right-handed alpha
Helix 19
19
A
381 383Right-handed 310
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There are 3 sheets in PDB entry 1OXA. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
311 314parallel
Strand 4
A
291 294anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
399 401anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
304 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il