Analysis of interatomic Contacts of Structural Units in PDB entry:
1OXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OXB entry

There are 2 chains in PDB entry 1OXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 167
B
 SER 1087CYS 1210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1OXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
25 52Right-handed alpha
Helix 3
3
A
55 73Right-handed alpha
Helix 4
4
A
75 90Right-handed alpha
Helix 5
5
A
98 104Right-handed alpha
Helix 6
6
A
108 112Right-handed 310
Helix 7
7
A
134 164Right-handed alpha
Helix 8
8
B
1096 1109Right-handed alpha
Helix 9
9
B
1120 1132Right-handed alpha
Helix 10
10
B
1151 1162Right-handed alpha
Helix 11
11
B
1177 1187Right-handed alpha
Helix 12
12
B
1198 1210Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1OXB.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1114 1118first strand
Strand 2
B
1089 1093parallel
Strand 3
B
1140 1144parallel
Strand 4
B
1169 1173parallel
Strand 5
B
1191 1194parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il