Analysis of interatomic Contacts of Structural Units in PDB entry:
1OXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OXP entry

There is 1 chain in PDB entry 1OXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LYS 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1OXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 25Right-handed 310
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
77 88Right-handed alpha
Helix 4
4
A
93 97Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
141 150Right-handed 310
Helix 7
7
A
170 179Right-handed alpha
Helix 8
8
A
202 215Right-handed alpha
Helix 9
9
A
233 236Right-handed alpha
Helix 10
10
A
238 246Right-handed alpha
Helix 11
11
A
277 295Right-handed alpha
Helix 12
12
A
300 310Right-handed alpha
Helix 13
13
A
313 344Right-handed alpha
Helix 14
14
A
351 355Right-handed 310
Helix 15
15
A
367 376Right-handed alpha
Helix 16
16
A
389 391Right-handed 310
Helix 17
17
A
397 406Right-handed alpha
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There are 3 sheets in PDB entry 1OXP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
268 273anti-parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
218 223parallel
Strand 5
A
185 189parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 137first strand
Strand 2
A
154 159parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 362first strand
Strand 2
A
386 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il