Analysis of interatomic Contacts of Structural Units in PDB entry:
1OXQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OXQ entry

There are 6 chains in PDB entry 1OXQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 71THR 169
B
 ALA 71SER 171
C
 ALA 71SER 171
D
 ALA 71HIS 170
E
 GLY 78SER 171
F
 ALA 1ILE 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1OXQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 85Right-handed 310
Helix 2
2
A
86 93Right-handed alpha
Helix 3
3
A
94 97Right-handed 310
Helix 4
4
A
104 111Right-handed alpha
Helix 5
5
A
139 148Right-handed alpha
Helix 6
6
A
151 168Right-handed alpha
Helix 7
7
B
81 85Right-handed 310
Helix 8
8
B
86 93Right-handed alpha
Helix 9
9
B
94 97Right-handed 310
Helix 10
10
B
104 111Right-handed alpha
Helix 11
11
B
139 148Right-handed alpha
Helix 12
12
B
151 170Right-handed alpha
Helix 13
13
C
81 85Right-handed 310
Helix 14
14
C
86 93Right-handed alpha
Helix 15
15
C
104 111Right-handed alpha
Helix 16
16
C
139 148Right-handed alpha
Helix 17
17
C
151 170Right-handed alpha
Helix 18
18
D
81 85Right-handed 310
Helix 19
19
D
86 93Right-handed alpha
Helix 20
20
D
94 97Right-handed 310
Helix 21
21
D
104 111Right-handed alpha
Helix 22
22
D
139 148Right-handed alpha
Helix 23
23
D
151 169Right-handed alpha
Helix 24
24
E
81 85Right-handed 310
Helix 25
25
E
86 93Right-handed alpha
Helix 26
26
E
98 102Right-handed 310
Helix 27
27
E
104 111Right-handed alpha
Helix 28
28
E
139 148Right-handed alpha
Helix 29
29
E
151 169Right-handed alpha
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There are 5 sheets in PDB entry 1OXQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
D
130 132anti-parallel
Strand 3
D
122 124anti-parallel
Strand 4
D
113 115anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
122 124anti-parallel
Strand 3
A
130 132anti-parallel
Strand 4
D
74 75anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
C
130 132anti-parallel
Strand 3
C
122 124anti-parallel
Strand 4
C
113 115anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
121 124anti-parallel
Strand 3
B
130 132anti-parallel
Strand 4
C
74 75anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
113 115first strand
Strand 2
E
122 124anti-parallel
Strand 3
E
130 132anti-parallel
Strand 4
F
2 3anti-parallel
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