Analysis of interatomic Contacts of Structural Units in PDB entry:
1OXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OXW entry

There are 3 chains in PDB entry 1OXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 25ALA 384
B
 GLN 1024ASN 1382
C
 MSE 2022LYS 2383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 1OXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 40Right-handed 310
Helix 2
2
A
41 59Right-handed alpha
Helix 3
3
A
65 70Right-handed alpha
Helix 4
4
A
77 88Right-handed alpha
Helix 5
5
A
98 100Right-handed 310
Helix 6
6
A
101 114Right-handed alpha
Helix 7
7
A
127 139Right-handed alpha
Helix 8
8
A
142 146Right-handed 310
Helix 9
9
A
173 177Right-handed 310
Helix 10
10
A
179 189Right-handed alpha
Helix 11
11
A
217 220Right-handed 310
Helix 12
12
A
224 236Right-handed alpha
Helix 13
13
A
237 238Right-handed 310
Helix 14
14
A
239 243Right-handed 310
Helix 15
15
A
249 251Right-handed 310
Helix 16
16
A
271 276Right-handed alpha
Helix 17
17
A
279 285Right-handed alpha
Helix 18
18
A
286 310Right-handed alpha
Helix 19
19
A
311 311Right-handed 310
Helix 20
20
A
312 314Right-handed 310
Helix 21
21
A
325 330Right-handed 310
Helix 22
22
A
335 351Right-handed alpha
Helix 23
23
A
361 383Right-handed alpha
Helix 24
24
B
1024 1028Right-handed 310
Helix 25
25
B
1037 1040Right-handed 310
Helix 26
26
B
1041 1059Right-handed alpha
Helix 27
27
B
1065 1069Right-handed 310
Helix 28
28
B
1077 1088Right-handed alpha
Helix 29
29
B
1098 1100Right-handed 310
Helix 30
30
B
1101 1114Right-handed alpha
Helix 31
31
B
1127 1139Right-handed alpha
Helix 32
32
B
1142 1146Right-handed 310
Helix 33
33
B
1173 1177Right-handed 310
Helix 34
34
B
1179 1189Right-handed alpha
Helix 35
35
B
1217 1220Right-handed 310
Helix 36
36
B
1224 1236Right-handed alpha
Helix 37
37
B
1237 1238Right-handed 310
Helix 38
38
B
1239 1243Right-handed 310
Helix 39
39
B
1249 1251Right-handed 310
Helix 40
40
B
1271 1276Right-handed alpha
Helix 41
41
B
1279 1310Right-handed alpha
Helix 42
42
B
1311 1311Right-handed 310
Helix 43
43
B
1312 1314Right-handed 310
Helix 44
44
B
1325 1330Right-handed 310
Helix 45
45
B
1335 1350Right-handed alpha
Helix 46
46
B
1362 1382Right-handed alpha
Helix 47
47
C
2023 2028Right-handed alpha
Helix 48
48
C
2037 2040Right-handed 310
Helix 49
49
C
2041 2059Right-handed alpha
Helix 50
50
C
2065 2069Right-handed 310
Helix 51
51
C
2077 2088Right-handed alpha
Helix 52
52
C
2098 2100Right-handed 310
Helix 53
53
C
2101 2114Right-handed alpha
Helix 54
54
C
2127 2139Right-handed alpha
Helix 55
55
C
2142 2146Right-handed 310
Helix 56
56
C
2173 2177Right-handed 310
Helix 57
57
C
2179 2188Right-handed alpha
Helix 58
58
C
2217 2220Right-handed 310
Helix 59
59
C
2224 2236Right-handed alpha
Helix 60
60
C
2237 2238Right-handed 310
Helix 61
61
C
2239 2243Right-handed 310
Helix 62
62
C
2249 2251Right-handed 310
Helix 63
63
C
2271 2276Right-handed alpha
Helix 64
64
C
2279 2310Right-handed alpha
Helix 65
65
C
2311 2311Right-handed 310
Helix 66
66
C
2312 2314Right-handed 310
Helix 67
67
C
2325 2330Right-handed 310
Helix 68
68
C
2335 2352Right-handed alpha
Helix 69
69
C
2362 2383Right-handed alpha
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There are 8 sheets in PDB entry 1OXW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 202first strand
Strand 2
A
208 215anti-parallel
Strand 3
A
149 156anti-parallel
Strand 4
A
72 75parallel
Strand 5
A
29 34parallel
Strand 6
A
253 258parallel
Strand 7
A
316 319parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 202first strand
Strand 2
A
208 215anti-parallel
Strand 3
A
149 156anti-parallel
Strand 4
A
161 166anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1197 1202first strand
Strand 2
B
1208 1215anti-parallel
Strand 3
B
1149 1156anti-parallel
Strand 4
B
1072 1075parallel
Strand 5
B
1029 1034parallel
Strand 6
B
1253 1258parallel
Strand 7
B
1316 1319parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1197 1202first strand
Strand 2
B
1208 1215anti-parallel
Strand 3
B
1149 1156anti-parallel
Strand 4
B
1161 1166anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1353 1355first strand
Strand 2
B
1358 1361anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2197 2202first strand
Strand 2
C
2208 2215anti-parallel
Strand 3
C
2149 2156anti-parallel
Strand 4
C
2072 2075parallel
Strand 5
C
2029 2034parallel
Strand 6
C
2253 2258parallel
Strand 7
C
2316 2319parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2197 2202first strand
Strand 2
C
2208 2215anti-parallel
Strand 3
C
2149 2156anti-parallel
Strand 4
C
2161 2166anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2353 2355first strand
Strand 2
C
2358 2361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il