Analysis of interatomic Contacts of Structural Units in PDB entry:
1OXY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OXY entry

There is 1 chain in PDB entry 1OXY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1HIS 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 1OXY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
51 66Right-handed alpha
Helix 3
3
A
70 82Right-handed alpha
Helix 4
4
A
86 99Right-handed alpha
Helix 5
5
A
101 103Right-handed 310
Helix 6
6
A
111 114Right-handed alpha
Helix 7
7
A
116 118Right-handed 310
Helix 8
8
A
122 128Right-handed alpha
Helix 9
9
A
156 164Right-handed 310
Helix 10
10
A
167 179Right-handed alpha
Helix 11
11
A
196 217Right-handed alpha
Helix 12
12
A
266 282Right-handed alpha
Helix 13
13
A
300 309Right-handed alpha
Helix 14
14
A
317 320Right-handed alpha
Helix 15
15
A
323 332Right-handed alpha
Helix 16
16
A
334 336Right-handed 310
Helix 17
17
A
347 349Right-handed 310
Helix 18
18
A
354 356Right-handed 310
Helix 19
19
A
358 377Right-handed 310
Helix 20
20
A
383 386Right-handed alpha
Helix 21
21
A
476 482Right-handed alpha
Helix 22
22
A
504 506Right-handed 310
Helix 23
23
A
517 520Right-handed alpha
Helix 24
24
A
540 542Right-handed 310
Helix 25
25
A
563 566Right-handed alpha
Helix 26
26
A
580 583Right-handed alpha
Helix 27
27
A
609 612Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 1OXY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
292 294anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 416first strand
Strand 2
A
552 562anti-parallel
Strand 3
A
455 465anti-parallel
Strand 4
A
484 493anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 503first strand
Strand 2
A
442 449anti-parallel
Strand 3
A
391 399anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il