Analysis of interatomic Contacts of Structural Units in PDB entry:
1OY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OY3 entry

There are 3 chains in PDB entry 1OY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 191ARG 325
B
 THR 191ARG 302
D
 VAL 50GLY 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1OY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
240 244Right-handed 310
Helix 2
2
C
293 305Right-handed alpha
Helix 3
3
C
305 316Right-handed alpha
Helix 4
4
B
240 242Right-handed 310
Helix 5
5
D
60 68Right-handed alpha
Helix 6
6
D
70 82Right-handed alpha
Helix 7
7
D
84 89Right-handed 310
Helix 8
8
D
96 105Right-handed alpha
Helix 9
9
D
106 116Right-handed alpha
Helix 10
10
D
129 135Right-handed alpha
Helix 11
11
D
139 147Right-handed alpha
Helix 12
12
D
195 200Right-handed 310
Helix 13
13
D
209 217Right-handed alpha
Helix 14
14
D
219 230Right-handed alpha
Helix 15
15
D
243 251Right-handed alpha
Helix 16
16
D
253 263Right-handed alpha
Helix 17
17
D
276 283Right-handed alpha
Helix 18
18
D
286 296Right-handed alpha
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There are 6 sheets in PDB entry 1OY3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 199first strand
Strand 2
C
211 216anti-parallel
Strand 3
C
249 253anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 205first strand
Strand 2
C
284 289parallel
Strand 3
C
266 274anti-parallel
Strand 4
C
225 230anti-parallel
Strand 5
C
233 236anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 205first strand
Strand 2
C
284 289parallel
Strand 3
C
266 274anti-parallel
Strand 4
C
279 280anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
249 253anti-parallel
Strand 4
B
244 245anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
284 289parallel
Strand 3
B
266 274anti-parallel
Strand 4
B
225 230anti-parallel
Strand 5
B
233 236anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
284 289parallel
Strand 3
B
266 274anti-parallel
Strand 4
B
279 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il