Analysis of interatomic Contacts of Structural Units in PDB entry:
1OY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OY5 entry

There are 3 chains in PDB entry 1OY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4ASP 235
B
 ASN 304ASP 535
C
 ASN 604ASP 835
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1OY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
24 33Right-handed alpha
Helix 3
3
A
44 47Right-handed 310
Helix 4
4
A
66 82Right-handed alpha
Helix 5
5
A
97 106Right-handed alpha
Helix 6
6
A
121 128Right-handed 310
Helix 7
7
A
142 156Right-handed alpha
Helix 8
8
A
194 198Right-handed 310
Helix 9
9
A
206 214Right-handed alpha
Helix 10
10
A
216 220Right-handed 310
Helix 11
11
A
227 231Right-handed 310
Helix 12
12
B
314 322Right-handed alpha
Helix 13
13
B
324 333Right-handed alpha
Helix 14
14
B
344 347Right-handed 310
Helix 15
15
B
366 381Right-handed alpha
Helix 16
16
B
397 406Right-handed alpha
Helix 17
17
B
421 428Right-handed 310
Helix 18
18
B
442 457Right-handed alpha
Helix 19
19
B
494 498Right-handed 310
Helix 20
20
B
503 514Right-handed alpha
Helix 21
21
B
516 521Right-handed alpha
Helix 22
22
C
614 622Right-handed alpha
Helix 23
23
C
624 633Right-handed alpha
Helix 24
24
C
644 647Right-handed 310
Helix 25
25
C
666 681Right-handed alpha
Helix 26
26
C
697 706Right-handed alpha
Helix 27
27
C
721 728Right-handed 310
Helix 28
28
C
742 756Right-handed alpha
Helix 29
29
C
794 799Right-handed 310
Helix 30
30
C
800 804Right-handed 310
Helix 31
31
C
806 814Right-handed alpha
Helix 32
32
C
827 832Right-handed alpha
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There are 9 sheets in PDB entry 1OY5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 42first strand
Strand 2
A
6 12parallel
Strand 3
A
109 114parallel
Strand 4
A
85 89parallel
Strand 5
A
130 131parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
64 65anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 192anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 342first strand
Strand 2
B
306 312parallel
Strand 3
B
409 414parallel
Strand 4
B
385 389parallel
Strand 5
B
430 431parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 354first strand
Strand 2
B
364 365anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
487 488first strand
Strand 2
B
491 492anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
636 642first strand
Strand 2
C
606 612parallel
Strand 3
C
709 714parallel
Strand 4
C
685 689parallel
Strand 5
C
730 731parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
653 654first strand
Strand 2
C
664 665anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
787 788first strand
Strand 2
C
791 792anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il