Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1OYE entry

There is 1 chain in PDB entry 1OYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	LYS 1036

There are 45 helices in PDB entry 1OYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	28	Right-handed alpha
Helix 2	2	A	53	59	Right-handed alpha
Helix 3	3	A	61	68	Right-handed alpha
Helix 4	4	A	99	109	Right-handed alpha
Helix 5	5	A	110	118	Right-handed 310
Helix 6	6	A	119	124	Right-handed alpha
Helix 7	7	A	152	159	Right-handed alpha
Helix 8	8	A	162	169	Right-handed alpha
Helix 9	9	A	189	195	Right-handed alpha
Helix 10	10	A	199	211	Right-handed alpha
Helix 11	11	A	242	248	Right-handed alpha
Helix 12	12	A	262	265	Right-handed alpha
Helix 13	13	A	299	311	Right-handed alpha
Helix 14	14	A	312	317	Right-handed 310
Helix 15	15	A	329	359	Right-handed alpha
Helix 16	16	A	371	387	Right-handed alpha
Helix 17	17	A	391	402	Right-handed alpha
Helix 18	18	A	402	423	Right-handed alpha
Helix 19	19	A	427	434	Right-handed alpha
Helix 20	20	A	434	454	Right-handed alpha
Helix 21	21	A	460	462	Right-handed 310
Helix 22	22	A	463	485	Right-handed alpha
Helix 23	23	A	487	496	Right-handed alpha
Helix 24	24	A	513	525	Right-handed alpha
Helix 25	25	A	525	537	Right-handed alpha
Helix 26	26	A	538	558	Right-handed alpha
Helix 27	27	A	583	600	Right-handed alpha
Helix 28	28	A	643	656	Right-handed alpha
Helix 29	29	A	691	709	Right-handed alpha
Helix 30	30	A	732	740	Right-handed alpha
Helix 31	31	A	742	755	Right-handed alpha
Helix 32	32	A	776	780	Right-handed 310
Helix 33	33	A	782	787	Right-handed 310
Helix 34	34	A	801	805	Right-handed alpha
Helix 35	35	A	837	843	Right-handed alpha
Helix 36	36	A	844	849	Right-handed alpha
Helix 37	37	A	871	888	Right-handed alpha
Helix 38	38	A	896	902	Right-handed 310
Helix 39	39	A	903	919	Right-handed alpha
Helix 40	40	A	924	952	Right-handed alpha
Helix 41	41	A	962	969	Right-handed alpha
Helix 42	42	A	971	986	Right-handed alpha
Helix 43	43	A	986	991	Right-handed alpha
Helix 44	44	A	998	1019	Right-handed alpha
Helix 45	45	A	1025	1033	Right-handed alpha

There are 10 sheets in PDB entry 1OYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	77	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	830	anti-parallel
Strand 7	A	682	685	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	77	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	830	anti-parallel
Strand 7	A	715	718	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	136	144	anti-parallel
Strand 3	A	285	292	anti-parallel
Strand 4	A	174	177	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	136	144	anti-parallel
Strand 3	A	285	292	anti-parallel
Strand 4	A	278	280	anti-parallel
Strand 5	A	611	613	anti-parallel
Strand 6	A	624	628	anti-parallel
Strand 7	A	573	577	anti-parallel
Strand 8	A	662	663	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	767	773	parallel
Strand 4	A	757	764	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	232	233	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	254	first strand
Strand 2	A	258	261	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	608	first strand
Strand 2	A	630	631	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	729	first strand
Strand 2	A	807	811	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	793	first strand
Strand 2	A	797	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1OYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYE